Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_C17
         (803 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0917 + 24281029-24281137,24281998-24282095,24282196-242823...    29   3.3  
01_06_0140 - 26881282-26881290,26882027-26882128,26882816-268829...    29   4.3  
06_03_0310 - 19453047-19453160,19453240-19453338,19453441-194535...    29   5.7  
02_03_0388 + 18429538-18430598,18430971-18431081,18431165-184312...    29   5.7  
01_06_0381 + 28878811-28879120,28880189-28880331,28880753-288815...    29   5.7  
01_06_0475 + 29610268-29610711                                         28   7.6  
12_02_1072 + 25834719-25834908,25837822-25838099,25839265-25839798     28   10.0 

>12_02_0917 +
           24281029-24281137,24281998-24282095,24282196-24282372,
           24282490-24282590,24282684-24282759,24282843-24282902,
           24282999-24283195,24283296-24283392,24283478-24283564,
           24283925-24283983,24284535-24284626,24284706-24284783,
           24284891-24285051,24285303-24285530
          Length = 539

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -1

Query: 665 MQTFYRNKSYQPPRKLQFYGVPPLLHDV 582
           M   +R K Y  PR  +FY  P  +HDV
Sbjct: 506 MPFLHRRKGYSDPRNDEFYSFPIRVHDV 533


>01_06_0140 -
           26881282-26881290,26882027-26882128,26882816-26882924,
           26883712-26883860,26883941-26884043,26884635-26884810,
           26885004-26885066,26885258-26885346,26885428-26885538,
           26885610-26885744,26886415-26886580,26886788-26886856,
           26886943-26887230,26888612-26888866
          Length = 607

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 17/44 (38%), Positives = 21/44 (47%)
 Frame = +2

Query: 431 SGTNNTTRSMRSCLAMRRCSGSAGGCRFFR*SACLCVLDKCSRL 562
           SG +    + R   A R C GSAG  R  R SA   V+ +  RL
Sbjct: 26  SGADALRPAARLSFAPRWCGGSAGAARARRESAVTSVISRAPRL 69


>06_03_0310 -
           19453047-19453160,19453240-19453338,19453441-19453513,
           19453598-19453708,19453795-19453956,19454064-19454340,
           19454542-19455160,19455256-19455471
          Length = 556

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 14/23 (60%), Positives = 17/23 (73%)
 Frame = +1

Query: 118 PSKSRASQNLPPXSETRPTEKIR 186
           PSKSRASQ  PP + TR T+K +
Sbjct: 207 PSKSRASQ-APPPAHTRATKKAK 228


>02_03_0388 +
           18429538-18430598,18430971-18431081,18431165-18431237,
           18431513-18431695
          Length = 475

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = +1

Query: 94  PDDVANTNPSKSRASQNLPPXSETRPTEKIRRET 195
           P       PSKSRA Q  PP + TR T+K + +T
Sbjct: 115 PPQAPRPAPSKSRAPQ-APPPAPTRATKKAKVDT 147


>01_06_0381 +
           28878811-28879120,28880189-28880331,28880753-28881532,
           28882568-28883968
          Length = 877

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 13/27 (48%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
 Frame = -3

Query: 576 HTEEANREHLSSTHKHAL--HRKNLHP 502
           H  E +R H S  HKH L  H K+L P
Sbjct: 743 HRSEDSRAHTSDVHKHKLKRHSKDLEP 769


>01_06_0475 + 29610268-29610711
          Length = 147

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 15/30 (50%), Positives = 19/30 (63%)
 Frame = -3

Query: 270 SPFSSNPSLATKGSTSKLTLRHSPLSFSPD 181
           SP SS+P      S+++ TL HSP S SPD
Sbjct: 54  SPMSSSPP---SRSSTRATLTHSPSSASPD 80


>12_02_1072 + 25834719-25834908,25837822-25838099,25839265-25839798
          Length = 333

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 16/43 (37%), Positives = 24/43 (55%)
 Frame = -2

Query: 448 SVIGTTSIKRHDTRTLSSWPPVTTFPILRTEWKAVDVAQNTSS 320
           S+  TT+   HDT T +S PP+   P++ T    +  + NTSS
Sbjct: 180 SLTTTTTTIVHDTSTPTSSPPLP--PLMDTTLAQLQASMNTSS 220


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,525,022
Number of Sequences: 37544
Number of extensions: 464038
Number of successful extensions: 1241
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1192
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1241
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2185924824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)