Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_C17
         (803 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_17543| Best HMM Match : Keratin_B2 (HMM E-Value=1.9)                31   1.4  
SB_5826| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   1.4  
SB_52868| Best HMM Match : Homeobox (HMM E-Value=1.6e-23)              30   2.5  
SB_33066| Best HMM Match : RF-1 (HMM E-Value=5.9)                      29   4.4  
SB_35857| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.8  
SB_51089| Best HMM Match : I-set (HMM E-Value=1.4e-38)                 29   5.8  
SB_44812| Best HMM Match : DUF586 (HMM E-Value=6.5)                    28   7.7  
SB_15946| Best HMM Match : Extensin_2 (HMM E-Value=1)                  28   7.7  

>SB_17543| Best HMM Match : Keratin_B2 (HMM E-Value=1.9)
          Length = 229

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = -1

Query: 602 PPLLHDVTLTLRKPTANTCQARTSTHFTGKTC 507
           PP + DV  T  +PT  TC +   T  T KTC
Sbjct: 152 PPYMQDVYFTCHRPTCKTCTSPV-TALTCKTC 182


>SB_5826| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 402

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 15/40 (37%), Positives = 23/40 (57%)
 Frame = +2

Query: 221 LLVEPFVASDGFDENGDRCLKYLKAPLVDQEDPR*RVLGD 340
           LLV  F+A   + E+ +RCLK ++A   +   P  R+L D
Sbjct: 93  LLVAAFIAGSSYAESLERCLKEIQAAKKELRCPECRILVD 132


>SB_52868| Best HMM Match : Homeobox (HMM E-Value=1.6e-23)
          Length = 434

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 19/62 (30%), Positives = 24/62 (38%)
 Frame = -3

Query: 687 THKTFYHHANFLPQQILPATTQTTILRGSTSLTRCYSHTEEANREHLSSTHKHALHRKNL 508
           TH    H +   P     +TT   I R ST  T  Y         H S+TH + +H    
Sbjct: 52  THHYIVHASTTHPYITYASTTHPHIARASTPTTHPYI-------THASTTHHYIVHASTT 104

Query: 507 HP 502
           HP
Sbjct: 105 HP 106


>SB_33066| Best HMM Match : RF-1 (HMM E-Value=5.9)
          Length = 378

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 15/48 (31%), Positives = 21/48 (43%)
 Frame = -1

Query: 650 RNKSYQPPRKLQFYGVPPLLHDVTLTLRKPTANTCQARTSTHFTGKTC 507
           RNK ++ P ++  YGVP L   V     +   N CQ+         TC
Sbjct: 44  RNKPHRKPVRIVIYGVPVLQRGVQSFSTQKYKNGCQSTFDRTDPSSTC 91


>SB_35857| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2680

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +3

Query: 495 PLADAGFSGEVRACACLTSVRGWLPQCESNIV*ERWNP 608
           P  +   SG    CACLT+V+G   +C+  +    WNP
Sbjct: 782 PAGELECSGSNGKCACLTNVQGL--RCDQCVSAYYWNP 817


>SB_51089| Best HMM Match : I-set (HMM E-Value=1.4e-38)
          Length = 1334

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -3

Query: 651  PQQILPATTQTTILRGSTSLTRCYS 577
            PQ + P T  T +LRG +++  CY+
Sbjct: 1163 PQILTPLTRSTAVLRGKSAVLTCYA 1187


>SB_44812| Best HMM Match : DUF586 (HMM E-Value=6.5)
          Length = 520

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 16/46 (34%), Positives = 20/46 (43%)
 Frame = +2

Query: 371 RECSYRRPR*EGSRVVPLYRSGTNNTTRSMRSCLAMRRCSGSAGGC 508
           RE    RP   GS   P +RSG + T    R   + R C  +A  C
Sbjct: 134 REVQSGRPS-PGSSSTPTWRSGKSYTQEPNRLASSWRSCCATAAAC 178


>SB_15946| Best HMM Match : Extensin_2 (HMM E-Value=1)
          Length = 285

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = -1

Query: 602 PPLLHDVTLTLRKPTANTCQARTSTHFTGKTC 507
           PP + DV     +PT  TC +   T  T KTC
Sbjct: 104 PPYMQDVYFICHRPTCKTCTSPV-TALTCKTC 134


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,795,289
Number of Sequences: 59808
Number of extensions: 493441
Number of successful extensions: 2060
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1930
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2060
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2227723674
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)