Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_C17
         (803 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF101315-5|AAM34816.1|  457|Caenorhabditis elegans Hypothetical ...    33   0.32 
AL032655-6|CAA21722.1|  462|Caenorhabditis elegans Hypothetical ...    31   0.97 
U41535-11|ABD63232.1|  249|Caenorhabditis elegans Lin-26 related...    29   2.9  
U41535-10|AAN84823.1|  251|Caenorhabditis elegans Lin-26 related...    29   2.9  
U41535-9|AAK67250.1|  296|Caenorhabditis elegans Lin-26 related ...    29   2.9  
U41535-8|AAT81202.1|  300|Caenorhabditis elegans Lin-26 related ...    29   2.9  
U41535-7|AAK67249.1|  309|Caenorhabditis elegans Lin-26 related ...    29   2.9  
AJ012486-1|CAA10050.1|  296|Caenorhabditis elegans LIR-1C protei...    29   2.9  
AJ012485-1|CAA10049.1|  309|Caenorhabditis elegans LIR-1A protei...    29   2.9  
Z79754-1|CAB02090.1|  457|Caenorhabditis elegans Hypothetical pr...    29   5.1  
U97192-2|AAO38678.1|  622|Caenorhabditis elegans Hypothetical pr...    28   6.8  
U97192-1|AAB52434.2|  986|Caenorhabditis elegans Hypothetical pr...    28   6.8  
Z81573-2|CAB04626.1|  294|Caenorhabditis elegans Hypothetical pr...    28   9.0  
AL034392-5|CAE17989.1|  134|Caenorhabditis elegans Hypothetical ...    28   9.0  
AC024136-3|AAF35959.2|  470|Caenorhabditis elegans Hypothetical ...    28   9.0  

>AF101315-5|AAM34816.1|  457|Caenorhabditis elegans Hypothetical
           protein T22H9.1 protein.
          Length = 457

 Score = 32.7 bits (71), Expect = 0.32
 Identities = 25/100 (25%), Positives = 39/100 (39%), Gaps = 1/100 (1%)
 Frame = -1

Query: 644 KSYQPPRKLQFYGVPPLLHDVTLTLRKPTANTCQARTSTHFTGKTCIRQRNPNTAASPDT 465
           K Y+  RK+ F G P + +       KP  N      S  F GKT  +        S   
Sbjct: 39  KFYENQRKIHFGGTPRIQYREGGKFYKPPRNEQDPEKSGKFAGKTGKKLEMKKKLKSKKV 98

Query: 464 NASNV*CYWYHFDKAAR-HENPLIVAAGNYIPDPADRMES 348
               V      +D+ A   E+  ++   + +P+P D +ES
Sbjct: 99  KGDPVKGTSTEYDQLANSDEDNDVMDVSDMLPEPEDEVES 138


>AL032655-6|CAA21722.1|  462|Caenorhabditis elegans Hypothetical
           protein Y6B3B.11 protein.
          Length = 462

 Score = 31.1 bits (67), Expect = 0.97
 Identities = 25/82 (30%), Positives = 37/82 (45%), Gaps = 2/82 (2%)
 Frame = +2

Query: 233 PFVASDGFDENGDRCLK-YLKAPLVDQEDPR*RVLGDVDCFPFCPQDRECSYRRPR*EGS 409
           P V S   D+  ++ L  Y++  LVD  +PR RVL     F  C  D EC+ +    +  
Sbjct: 85  PAVISTKVDKEVEKRLPMYIQIVLVDVLEPRGRVLKHHVAFVKCSFDDECTMKTALEQVD 144

Query: 410 RVVPLYRSG-TNNTTRSMRSCL 472
            V  L   G T    R  ++C+
Sbjct: 145 TVYHLAAVGMTGQYARDRKACM 166


>U41535-11|ABD63232.1|  249|Caenorhabditis elegans Lin-26 related
           protein 1, isoform e protein.
          Length = 249

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 4/57 (7%)
 Frame = -3

Query: 687 THKTFYHHANFLPQQILPATTQTTILRGSTSLTRC----YSHTEEANREHLSSTHKH 529
           T K   H   + PQ+         I+  S+   +C    YSH +   R+H+ S HKH
Sbjct: 125 TCKVCGHDVMYSPQRTWNLMRHVWIMHQSSKPNQCSICGYSHIKPYVRKHIESQHKH 181


>U41535-10|AAN84823.1|  251|Caenorhabditis elegans Lin-26 related
           protein 1, isoform c protein.
          Length = 251

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 4/57 (7%)
 Frame = -3

Query: 687 THKTFYHHANFLPQQILPATTQTTILRGSTSLTRC----YSHTEEANREHLSSTHKH 529
           T K   H   + PQ+         I+  S+   +C    YSH +   R+H+ S HKH
Sbjct: 185 TCKVCGHDVMYSPQRTWNLMRHVWIMHQSSKPNQCSICGYSHIKPYVRKHIESQHKH 241


>U41535-9|AAK67250.1|  296|Caenorhabditis elegans Lin-26 related
           protein 1, isoform a protein.
          Length = 296

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 4/57 (7%)
 Frame = -3

Query: 687 THKTFYHHANFLPQQILPATTQTTILRGSTSLTRC----YSHTEEANREHLSSTHKH 529
           T K   H   + PQ+         I+  S+   +C    YSH +   R+H+ S HKH
Sbjct: 185 TCKVCGHDVMYSPQRTWNLMRHVWIMHQSSKPNQCSICGYSHIKPYVRKHIESQHKH 241


>U41535-8|AAT81202.1|  300|Caenorhabditis elegans Lin-26 related
           protein 1, isoform d protein.
          Length = 300

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 4/57 (7%)
 Frame = -3

Query: 687 THKTFYHHANFLPQQILPATTQTTILRGSTSLTRC----YSHTEEANREHLSSTHKH 529
           T K   H   + PQ+         I+  S+   +C    YSH +   R+H+ S HKH
Sbjct: 185 TCKVCGHDVMYSPQRTWNLMRHVWIMHQSSKPNQCSICGYSHIKPYVRKHIESQHKH 241


>U41535-7|AAK67249.1|  309|Caenorhabditis elegans Lin-26 related
           protein 1, isoform b protein.
          Length = 309

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 4/57 (7%)
 Frame = -3

Query: 687 THKTFYHHANFLPQQILPATTQTTILRGSTSLTRC----YSHTEEANREHLSSTHKH 529
           T K   H   + PQ+         I+  S+   +C    YSH +   R+H+ S HKH
Sbjct: 185 TCKVCGHDVMYSPQRTWNLMRHVWIMHQSSKPNQCSICGYSHIKPYVRKHIESQHKH 241


>AJ012486-1|CAA10050.1|  296|Caenorhabditis elegans LIR-1C protein
           protein.
          Length = 296

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 4/57 (7%)
 Frame = -3

Query: 687 THKTFYHHANFLPQQILPATTQTTILRGSTSLTRC----YSHTEEANREHLSSTHKH 529
           T K   H   + PQ+         I+  S+   +C    YSH +   R+H+ S HKH
Sbjct: 185 TCKVCGHDVMYSPQRTWNLMRHVWIMHQSSKPNQCSICGYSHIKPYVRKHIESQHKH 241


>AJ012485-1|CAA10049.1|  309|Caenorhabditis elegans LIR-1A protein
           protein.
          Length = 309

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 4/57 (7%)
 Frame = -3

Query: 687 THKTFYHHANFLPQQILPATTQTTILRGSTSLTRC----YSHTEEANREHLSSTHKH 529
           T K   H   + PQ+         I+  S+   +C    YSH +   R+H+ S HKH
Sbjct: 185 TCKVCGHDVMYSPQRTWNLMRHVWIMHQSSKPNQCSICGYSHIKPYVRKHIESQHKH 241


>Z79754-1|CAB02090.1|  457|Caenorhabditis elegans Hypothetical
           protein F25H2.1 protein.
          Length = 457

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 5/28 (17%)
 Frame = +1

Query: 445 HYTFDAFVSGDAAVF-----GFRWRMQV 513
           HYT DA+VSG   VF     G RW+ +V
Sbjct: 280 HYTIDAYVSGSPYVFVNKKIGKRWKFKV 307


>U97192-2|AAO38678.1|  622|Caenorhabditis elegans Hypothetical
           protein C01F4.2b protein.
          Length = 622

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 2/57 (3%)
 Frame = -3

Query: 351 KQSTSPKTRHLGSS*STNGAFRYFKHRSPFSSNPSLATKGSTS--KLTLRHSPLSFS 187
           + STS +     S       +R FKHR+ F S  S   K      +LTLRH  +  S
Sbjct: 110 QMSTSRRLAGFASRSIRKSQWRLFKHRTFFGSQRSSMKKNQLQLPRLTLRHPSIDSS 166


>U97192-1|AAB52434.2|  986|Caenorhabditis elegans Hypothetical
           protein C01F4.2a protein.
          Length = 986

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 2/57 (3%)
 Frame = -3

Query: 351 KQSTSPKTRHLGSS*STNGAFRYFKHRSPFSSNPSLATKGSTS--KLTLRHSPLSFS 187
           + STS +     S       +R FKHR+ F S  S   K      +LTLRH  +  S
Sbjct: 110 QMSTSRRLAGFASRSIRKSQWRLFKHRTFFGSQRSSMKKNQLQLPRLTLRHPSIDSS 166


>Z81573-2|CAB04626.1|  294|Caenorhabditis elegans Hypothetical
           protein M02G9.3 protein.
          Length = 294

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 7/47 (14%)
 Frame = -1

Query: 563 PTANTCQARTSTHFTGKTCIR--QRNP-----NTAASPDTNASNV*C 444
           P+ ++CQ+  S+  T  TCIR  QRN      NT ++  TN  N  C
Sbjct: 90  PSCSSCQSACSSACTTPTCIRTCQRNSCSNLCNTGSNSCTNRCNSQC 136


>AL034392-5|CAE17989.1|  134|Caenorhabditis elegans Hypothetical
           protein Y40B1A.5 protein.
          Length = 134

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -1

Query: 368 PADRMESSRRRPKHVISDPPDP 303
           P     ++RRR +HV+S PP P
Sbjct: 4   PVVEFTTARRRKRHVVSTPPPP 25


>AC024136-3|AAF35959.2|  470|Caenorhabditis elegans Hypothetical
           protein F54A3.6 protein.
          Length = 470

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 24/75 (32%), Positives = 30/75 (40%), Gaps = 4/75 (5%)
 Frame = -1

Query: 683 TRHFTTMQTFYRNKSYQPPRKLQF--YGVPPLLHDVTLTLRKPTANTCQA--RTSTHFTG 516
           T   TT  + Y N SY PP K+     G+  L   V   +  P+     A  R S HF  
Sbjct: 364 TTSSTTYSSNYSNPSYPPPPKVDLPPPGIVQLDRVVYPPVSPPSPPLAAAAPRASEHFVR 423

Query: 515 KTCIRQRNPNTAASP 471
              +  R   TAA P
Sbjct: 424 NGPVLGRMGQTAAPP 438


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,145,138
Number of Sequences: 27780
Number of extensions: 359283
Number of successful extensions: 958
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 892
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 958
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1966828226
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)