Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_C16
         (792 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g25605.1 68415.m03067 expressed protein                             31   0.66 
At4g01030.1 68417.m00140 pentatricopeptide (PPR) repeat-containi...    30   2.0  
At3g60140.1 68416.m06715 glycosyl hydrolase family 1 protein con...    29   2.7  
At4g35380.1 68417.m05026 guanine nucleotide exchange family prot...    29   4.7  
At4g17500.1 68417.m02618 ethylene-responsive element-binding pro...    29   4.7  
At5g10800.1 68418.m01255 RNA recognition motif (RRM)-containing ...    28   8.2  
At3g12690.3 68416.m01586 protein kinase, putative similar to vir...    28   8.2  
At3g12690.2 68416.m01585 protein kinase, putative similar to vir...    28   8.2  
At3g12690.1 68416.m01584 protein kinase, putative similar to vir...    28   8.2  

>At2g25605.1 68415.m03067 expressed protein
          Length = 200

 Score = 31.5 bits (68), Expect = 0.66
 Identities = 16/41 (39%), Positives = 26/41 (63%), Gaps = 2/41 (4%)
 Frame = -1

Query: 450 SASMRHFDKAARHENPLIVAAGNYIPD--PADRMESSRRRP 334
           SA+++HF+   R    L+ A+ + +PD   AD +ES R+RP
Sbjct: 16  SANVKHFNGYGRLNRNLVRASSSDVPDFLSADWLESRRKRP 56


>At4g01030.1 68417.m00140 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 500

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 14/36 (38%), Positives = 24/36 (66%), Gaps = 3/36 (8%)
 Frame = +3

Query: 174 LRRSGEKLSGLCLRVNLLVEPFVAS---DGFDENGD 272
           L  SG+++ G CLR NL+ + +VA+   D + ++GD
Sbjct: 143 LLHSGKEVHGFCLRKNLICDAYVATALVDMYGKSGD 178


>At3g60140.1 68416.m06715 glycosyl hydrolase family 1 protein
           contains Pfam PF00232 : Glycosyl hydrolase family 1
           domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase;
           similar to Cyanogenic Beta-Glucosidase
           (GI:1311386)(pdb:1CBG) [Trifolium Repens]; identical
           beta-glucosidase GI:10834547
          Length = 577

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 19/71 (26%), Positives = 26/71 (36%), Gaps = 8/71 (11%)
 Frame = +1

Query: 589 VSEHYTCIGHDGAYASFVECHLISK----GHFTSPT----YHRVETSXNEGGTXAYRLDV 744
           +  H+T + H  A   F +C   S     G   SP     YH   T   E    A   ++
Sbjct: 232 IVSHHTLLAHAAAVEEFRKCEKTSHDGQIGIVLSPRWFEPYHSDSTDDKEAAERALAFEI 291

Query: 745 GAECXPTVEGD 777
           G    P + GD
Sbjct: 292 GWHLDPVIHGD 302


>At4g35380.1 68417.m05026 guanine nucleotide exchange family protein
            similar to guanine nucleotide exchange factor [Homo
            sapiens] GI:5456754; contains Pfam profile PF01369: Sec7
            domain
          Length = 1706

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 20/99 (20%), Positives = 41/99 (41%)
 Frame = -1

Query: 663  LRNKVTLYKTCIRPVMTYASVVFAHAARIHLKSFQIIQSRFCRIAVGAPWFVRNVDLHDD 484
            +  ++T+Y  CIR ++T+ +  F     I   + + +  RFC + +     V N  L ++
Sbjct: 1203 IETEITVYADCIRCLITFTNSKF--EGDIGFNTIEFL--RFCALKLEEGGLVLNEKLKNN 1258

Query: 483  LDLESISKYLQSASMRHFDKAARHENPLIVAAGNYIPDP 367
                    +  + S    D+   +  PL+      + DP
Sbjct: 1259 TISALKEDFSDTQSFTDLDEQVSYWIPLLTGLCKQVSDP 1297


>At4g17500.1 68417.m02618 ethylene-responsive element-binding
           protein 1 (ERF1) / EREBP-2 protein identical to
           SP|O80337 Ethylene responsive element binding factor 1
           (EREBP-2 protein) [Arabidopsis thaliana]; a false single
           bp exon was added to circumvent a single basepair
           insertion in the genomic sequence, supported by
           cDNA/genome alignment.
          Length = 188

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +1

Query: 388 GGHDERVLVSCRFIEVAHGRRLKIL 462
           GG D+ + V C  +EVA G RL +L
Sbjct: 164 GGMDKGLTVKCEVVEVARGDRLLVL 188


>At5g10800.1 68418.m01255 RNA recognition motif (RRM)-containing
           protein KIAA0332 gene, Homo sapiens, EMBL:HSAB2330
          Length = 947

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -2

Query: 212 QTQPTEFLAGSSQWVAFPXPVVDSAKH 132
           +T+P   +AGS +W+  P P   S +H
Sbjct: 396 RTEPYIMIAGSGRWIPPPLPATRSPEH 422


>At3g12690.3 68416.m01586 protein kinase, putative similar to viroid
           symptom modulation protein [Lycopersicon esculentum]
           gi|7672777|gb|AAF66637
          Length = 577

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = -3

Query: 280 KHRSPFSSNPSLATKGSTSKLTLRHSPLSFSPDLLS 173
           KH+ P S  P  +T+G+ S+  L+H+  S   D L+
Sbjct: 56  KHQPPKSLEPPPSTRGTNSEGDLKHNTYSSDGDSLA 91


>At3g12690.2 68416.m01585 protein kinase, putative similar to viroid
           symptom modulation protein [Lycopersicon esculentum]
           gi|7672777|gb|AAF66637
          Length = 577

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = -3

Query: 280 KHRSPFSSNPSLATKGSTSKLTLRHSPLSFSPDLLS 173
           KH+ P S  P  +T+G+ S+  L+H+  S   D L+
Sbjct: 56  KHQPPKSLEPPPSTRGTNSEGDLKHNTYSSDGDSLA 91


>At3g12690.1 68416.m01584 protein kinase, putative similar to viroid
           symptom modulation protein [Lycopersicon esculentum]
           gi|7672777|gb|AAF66637
          Length = 577

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = -3

Query: 280 KHRSPFSSNPSLATKGSTSKLTLRHSPLSFSPDLLS 173
           KH+ P S  P  +T+G+ S+  L+H+  S   D L+
Sbjct: 56  KHQPPKSLEPPPSTRGTNSEGDLKHNTYSSDGDSLA 91


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,245,570
Number of Sequences: 28952
Number of extensions: 307434
Number of successful extensions: 935
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 866
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 935
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1785055200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)