Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_C15
         (911 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    23   3.9  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    23   3.9  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          23   3.9  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    23   5.1  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   8.9  

>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 23.0 bits (47), Expect = 3.9
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = +3

Query: 699 TSSAYIDLPPYTPTAHLRQWGGVVTTF 779
           TS     LPP + T  +  W GV  TF
Sbjct: 288 TSGINASLPPVSYTKAIDIWTGVCLTF 314


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 23.0 bits (47), Expect = 3.9
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = +3

Query: 699 TSSAYIDLPPYTPTAHLRQWGGVVTTF 779
           TS     LPP + T  +  W GV  TF
Sbjct: 288 TSGINASLPPVSYTKAIDIWTGVCLTF 314


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 23.0 bits (47), Expect = 3.9
 Identities = 10/35 (28%), Positives = 18/35 (51%)
 Frame = -1

Query: 827 IDVNGSCLAPKSTDFPKCRNNSAPLTQMGGRRVRW 723
           + + G C  P+S D P   + S+P  + G  R+ +
Sbjct: 115 LKIKGLCEVPESRDGPPSVSLSSPPREPGTPRINF 149


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 22.6 bits (46), Expect = 5.1
 Identities = 9/32 (28%), Positives = 19/32 (59%)
 Frame = -2

Query: 901 HVMRFGSTSMGVIAVXSRDFQVSTPLTSMGVV 806
           ++ +   + + + ++ S D  V+TPL SMG +
Sbjct: 103 NIQKDNKSYLSLRSLLSADVAVATPLISMGAL 134


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.8 bits (44), Expect = 8.9
 Identities = 9/39 (23%), Positives = 16/39 (41%)
 Frame = +2

Query: 614 SGGWIGPGVFYGGQNSVDGVSRRSDGSLNELCLYRPPTV 730
           SG      +  G  N     SR +  +   +  ++PPT+
Sbjct: 601 SGSGSAENLSSGSNNQTSSASRENTSNTTSMESFKPPTL 639


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 259,678
Number of Sequences: 438
Number of extensions: 6074
Number of successful extensions: 12
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29630055
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)