Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_C12
         (805 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    26   0.31 
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    24   1.2  
AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment h...    22   6.6  

>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless
           protein.
          Length = 302

 Score = 26.2 bits (55), Expect = 0.31
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +1

Query: 475 PAPAIPPSALRC*RGIPLP 531
           P PA+PP+   C   +PLP
Sbjct: 160 PGPALPPAGFLCNNYLPLP 178


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +1

Query: 475 PAPAIPPSALRC*RGIPLP 531
           P PA+PP+   C    PLP
Sbjct: 160 PGPALPPTGFLCNNYPPLP 178


>AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment
           homeodomain protein protein.
          Length = 232

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 17/53 (32%), Positives = 23/53 (43%)
 Frame = +1

Query: 352 TPWAAHRSHLAPPHHRTDSRVPGAPAPAT**SLRGLSGSFTPAPAIPPSALRC 510
           +P +AH   +  P H +  R+     P    SL   S   T AP  PP  +RC
Sbjct: 56  SPSSAHTVLIPQPLHPSVPRLGHPQWPFAWGSLXRSSSPQTSAPTGPP-IVRC 107


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 195,606
Number of Sequences: 336
Number of extensions: 5046
Number of successful extensions: 15
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21895259
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)