Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_C12
         (805 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC27.02c |ask1|mug181|DASH complex subunit Ask1|Schizosaccharo...    28   1.8  
SPBC16H5.04 |||pho88 family protein|Schizosaccharomyces pombe|ch...    27   2.4  
SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor Vma6|S...    27   3.1  
SPBC30B4.04c |sol1||SWI/SNF complex subunit Sol1|Schizosaccharom...    26   7.2  
SPAC10F6.02c |prp22||ATP-dependent RNA helicase Prp22|Schizosacc...    26   7.2  
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces...    26   7.2  
SPAC21E11.05c |cyp8||cyclophilin family peptidyl-prolyl cis-tran...    26   7.2  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    25   9.5  

>SPBC27.02c |ask1|mug181|DASH complex subunit
           Ask1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 307

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 14/51 (27%), Positives = 23/51 (45%)
 Frame = +3

Query: 396 PDRQSSTGRPRTRHLIVPTGAERELHARAGHPAFRAEVLKRDPTPFHAPQP 548
           P+    TGR    H ++ T  + ++  R        EV+  D +PF +P P
Sbjct: 168 PENNPHTGRSALLHRVLDTNWQVQVTPREPKNLQSQEVMDIDSSPFVSPSP 218


>SPBC16H5.04 |||pho88 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 190

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 13/25 (52%), Positives = 14/25 (56%)
 Frame = -1

Query: 646 KPLIAGCRRPHVRGSGLVGGHGQVL 572
           KP I   RRP     GL+G  GQVL
Sbjct: 149 KPAIDELRRPFKSSGGLLGSFGQVL 173


>SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor
           Vma6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 905

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 10/45 (22%), Positives = 21/45 (46%)
 Frame = -2

Query: 372 PVRRPRCISRNDVLRDFPGDEIPSYHQDGYRRRRTFGAHCGTVCL 238
           P+ +    +  D+       ++  Y    +++  +FGAHC  +CL
Sbjct: 68  PITKVVSCATQDIFYALSDSQVYVYQISTFKKLFSFGAHCQNMCL 112


>SPBC30B4.04c |sol1||SWI/SNF complex subunit
           Sol1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 865

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 13/43 (30%), Positives = 19/43 (44%)
 Frame = +3

Query: 468 LHARAGHPAFRAEVLKRDPTPFHAPQPHGTPLPGHKTWPWPPT 596
           LH+++  PAF A           + + +  P P   T P PPT
Sbjct: 327 LHSKSPSPAFTANRFSPAAPTTVSSERNAPPYPSAPTRPTPPT 369


>SPAC10F6.02c |prp22||ATP-dependent RNA helicase
            Prp22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1168

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = +3

Query: 426  RTRHLIVPTGAERELHARAGHPAFRAEVLKRD 521
            R RH +V  G +REL  RA    +   V KRD
Sbjct: 1034 RYRHPVVSCGRKRELILRALCSGYFTNVAKRD 1065


>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 23/86 (26%), Positives = 33/86 (38%), Gaps = 2/86 (2%)
 Frame = +1

Query: 160 EKGARSTCPAERLPT--KPHRAPPHRLHQTYGTAVRAESPPSPVPVLMIRRDFISGKIPK 333
           ++GA S  PA   P    PH          +     +  PP P P L+          PK
Sbjct: 334 DRGAFSAPPAPFFPLGFSPH-LNDESSRSRWSNISYSPPPPPPPPELL-------NHSPK 385

Query: 334 DVISGDTPWAAHRSHLAPPHHRTDSR 411
               GD P+  +R++   P  RT+ R
Sbjct: 386 SRPLGDKPYLFYRNNQIGPRTRTEGR 411


>SPAC21E11.05c |cyp8||cyclophilin family peptidyl-prolyl cis-trans
           isomerase Cyp8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 516

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +2

Query: 164 KAREALAPQNDYRLNPIELHHTGYTR 241
           K   A+  + DY LN   + H GY R
Sbjct: 254 KNERAIIAEEDYMLNHTRIKHKGYAR 279


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 15/42 (35%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
 Frame = +3

Query: 537 APQPHGTPLPGHKTWPWPPTSPD-PLTCGRRQPAMRGFSPAP 659
           AP P   P P + T   PP SP  P+      PA+   S  P
Sbjct: 250 APAPPPIPPPSNGTVSSPPNSPPRPIAPVSMNPAINSTSKPP 291


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,303,071
Number of Sequences: 5004
Number of extensions: 72472
Number of successful extensions: 207
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 206
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 390427050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)