Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_T7_C12
(805 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 36 0.045
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 36 0.045
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 36 0.045
Z81518-1|CAB04214.3| 601|Caenorhabditis elegans Hypothetical pr... 35 0.059
Z78418-3|CAB01697.1| 932|Caenorhabditis elegans Hypothetical pr... 33 0.18
AF025467-5|AAB71038.2| 1115|Caenorhabditis elegans Hypothetical ... 33 0.32
U97002-4|AAB52267.1| 630|Caenorhabditis elegans Hypothetical pr... 32 0.42
U58753-8|AAC24439.1| 633|Caenorhabditis elegans Hypothetical pr... 31 0.73
U58753-7|AAC24433.1| 581|Caenorhabditis elegans Hypothetical pr... 31 0.73
AF025467-4|AAN65300.1| 1130|Caenorhabditis elegans Hypothetical ... 31 0.73
U41108-2|AAQ23121.2| 639|Caenorhabditis elegans Tropomodulin pr... 31 1.3
AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical ... 31 1.3
EF378622-1|ABN54457.1| 1492|Caenorhabditis elegans enhancer of g... 30 1.7
AL117201-3|CAL64007.1| 1512|Caenorhabditis elegans Hypothetical ... 30 1.7
AC084154-11|AAK29874.1| 350|Caenorhabditis elegans Hypothetical... 30 1.7
Z73426-5|CAO78745.1| 1607|Caenorhabditis elegans Hypothetical pr... 30 2.2
Z73426-4|CAA97793.3| 1593|Caenorhabditis elegans Hypothetical pr... 30 2.2
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 30 2.2
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 30 2.2
L15188-9|AAM22024.1| 618|Caenorhabditis elegans Hypothetical pr... 30 2.2
AF026212-3|AAF99974.2| 1172|Caenorhabditis elegans Hypothetical ... 30 2.2
AF022985-10|AAB69961.1| 325|Caenorhabditis elegans Collagen pro... 29 2.9
AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical ... 29 2.9
U50191-3|AAK31557.1| 380|Caenorhabditis elegans Dumpy : shorter... 29 3.9
U41017-1|AAC48211.1| 343|Caenorhabditis elegans Hypothetical pr... 29 3.9
L12706-1|AAA17398.2| 360|Caenorhabditis elegans collagen protein. 29 3.9
AY349014-1|AAQ55494.1| 583|Caenorhabditis elegans NHR-41A protein. 29 3.9
AF025466-2|AAB71033.1| 261|Caenorhabditis elegans Hypothetical ... 29 3.9
AC006699-1|ABA00171.1| 160|Caenorhabditis elegans Nuclear hormo... 29 3.9
Z98866-8|CAB11562.2| 425|Caenorhabditis elegans Hypothetical pr... 29 5.1
Z82287-4|CAB05314.1| 433|Caenorhabditis elegans Hypothetical pr... 29 5.1
Y08816-1|CAA70050.2| 433|Caenorhabditis elegans TFIIE-alpha pro... 29 5.1
Z68219-2|CAA92476.1| 300|Caenorhabditis elegans Hypothetical pr... 28 6.8
Z47357-12|CAA87429.2| 205|Caenorhabditis elegans Hypothetical p... 28 6.8
Z46791-5|CAA86755.2| 948|Caenorhabditis elegans Hypothetical pr... 28 6.8
Z30974-3|CAA83227.2| 205|Caenorhabditis elegans Hypothetical pr... 28 6.8
Z73102-2|CAB63428.1| 341|Caenorhabditis elegans Hypothetical pr... 28 9.0
Z73102-1|CAA97419.1| 298|Caenorhabditis elegans Hypothetical pr... 28 9.0
Z66495-4|CAA91271.1| 954|Caenorhabditis elegans Hypothetical pr... 28 9.0
U39745-4|AAA80446.1| 325|Caenorhabditis elegans Collagen protei... 28 9.0
U23515-13|AAK21453.1| 823|Caenorhabditis elegans Hypothetical p... 28 9.0
AF098985-5|AAC67418.1| 99|Caenorhabditis elegans Hypothetical ... 28 9.0
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 35.5 bits (78), Expect = 0.045
Identities = 35/114 (30%), Positives = 39/114 (34%), Gaps = 2/114 (1%)
Frame = +3
Query: 363 GAQEPPCTA--PPPDRQSSTGRPRTRHLIVPTGAERELHARAGHPAFRAEVLKRDPTPFH 536
G+ PP A PPP R S P T P RAG P P P
Sbjct: 253 GSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSP----------PPP-- 300
Query: 537 APQPHGTPLPGHKTWPWPPTSPDPLTCGRRQPAMRGFSPAPRRDLAASAPNAGT 698
P P G+P G P SP P G P R AP R +P G+
Sbjct: 301 -PPPRGSPPTGSLPPPQAGGSPPPAGTGSPPPPPRQKRQAPERSPPTGSPPTGS 353
Score = 30.3 bits (65), Expect = 1.7
Identities = 31/103 (30%), Positives = 36/103 (34%), Gaps = 3/103 (2%)
Frame = +3
Query: 360 GGAQEPPCTAPPPDRQSSTGRPRTRHLIVPTGAERELHARAGHPAFRAEVLKRDPTPFHA 539
G Q PP +PPP P + +G+ A P R PT
Sbjct: 227 GKRQAPPAGSPPPPPPPKGSPP-----LAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPP 281
Query: 540 PQP-HGTPLPGHKTWPWPPTSP--DPLTCGRRQPAMRGFSPAP 659
P P G+P P P PP P P T G P G SP P
Sbjct: 282 PPPAGGSPPPPRAGSPPPPPPPRGSPPT-GSLPPPQAGGSPPP 323
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 35.5 bits (78), Expect = 0.045
Identities = 35/114 (30%), Positives = 39/114 (34%), Gaps = 2/114 (1%)
Frame = +3
Query: 363 GAQEPPCTA--PPPDRQSSTGRPRTRHLIVPTGAERELHARAGHPAFRAEVLKRDPTPFH 536
G+ PP A PPP R S P T P RAG P P P
Sbjct: 274 GSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSP----------PPP-- 321
Query: 537 APQPHGTPLPGHKTWPWPPTSPDPLTCGRRQPAMRGFSPAPRRDLAASAPNAGT 698
P P G+P G P SP P G P R AP R +P G+
Sbjct: 322 -PPPRGSPPTGSLPPPQAGGSPPPAGTGSPPPPPRQKRQAPERSPPTGSPPTGS 374
Score = 30.3 bits (65), Expect = 1.7
Identities = 31/103 (30%), Positives = 36/103 (34%), Gaps = 3/103 (2%)
Frame = +3
Query: 360 GGAQEPPCTAPPPDRQSSTGRPRTRHLIVPTGAERELHARAGHPAFRAEVLKRDPTPFHA 539
G Q PP +PPP P + +G+ A P R PT
Sbjct: 248 GKRQAPPAGSPPPPPPPKGSPP-----LAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPP 302
Query: 540 PQP-HGTPLPGHKTWPWPPTSP--DPLTCGRRQPAMRGFSPAP 659
P P G+P P P PP P P T G P G SP P
Sbjct: 303 PPPAGGSPPPPRAGSPPPPPPPRGSPPT-GSLPPPQAGGSPPP 344
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 35.5 bits (78), Expect = 0.045
Identities = 35/114 (30%), Positives = 39/114 (34%), Gaps = 2/114 (1%)
Frame = +3
Query: 363 GAQEPPCTA--PPPDRQSSTGRPRTRHLIVPTGAERELHARAGHPAFRAEVLKRDPTPFH 536
G+ PP A PPP R S P T P RAG P P P
Sbjct: 259 GSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSP----------PPP-- 306
Query: 537 APQPHGTPLPGHKTWPWPPTSPDPLTCGRRQPAMRGFSPAPRRDLAASAPNAGT 698
P P G+P G P SP P G P R AP R +P G+
Sbjct: 307 -PPPRGSPPTGSLPPPQAGGSPPPAGTGSPPPPPRQKRQAPERSPPTGSPPTGS 359
Score = 30.3 bits (65), Expect = 1.7
Identities = 31/103 (30%), Positives = 36/103 (34%), Gaps = 3/103 (2%)
Frame = +3
Query: 360 GGAQEPPCTAPPPDRQSSTGRPRTRHLIVPTGAERELHARAGHPAFRAEVLKRDPTPFHA 539
G Q PP +PPP P + +G+ A P R PT
Sbjct: 233 GKRQAPPAGSPPPPPPPKGSPP-----LAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPP 287
Query: 540 PQP-HGTPLPGHKTWPWPPTSP--DPLTCGRRQPAMRGFSPAP 659
P P G+P P P PP P P T G P G SP P
Sbjct: 288 PPPAGGSPPPPRAGSPPPPPPPRGSPPT-GSLPPPQAGGSPPP 329
>Z81518-1|CAB04214.3| 601|Caenorhabditis elegans Hypothetical
protein F28D9.1 protein.
Length = 601
Score = 35.1 bits (77), Expect = 0.059
Identities = 50/196 (25%), Positives = 67/196 (34%), Gaps = 3/196 (1%)
Frame = +3
Query: 102 KRGTRRSSTSPNSSQETTP*KRRAKHLPRRXXXXXXXXXXXXXXXXXIRYRSARRKSAFA 281
K G+ R SP++S+ P +RR P + R R SA
Sbjct: 298 KSGSPRRRRSPSASKSPPPARRRRS--PSQSKSPAPKRAKSRSKSPPAPARRRRSPSASK 355
Query: 282 GTRPDDKTGFHLRENPEGRHFGRYTVGGAQEPPCTAPPPDRQSSTGR-PRTRHLIVPTGA 458
P K ++P R R + ++ PP AP R S R P + I P
Sbjct: 356 SPPPAPKRAKSRSKSPPARR--RRSPSASKSPP--APRRRRSPSKSRSPAPKREIPPARR 411
Query: 459 ERELHARAGHPA-FRAEV-LKRDPTPFHAPQPHGTPLPGHKTWPWPPTSPDPLTCGRRQP 632
R A PA RA+ K P P P + P + P SP R
Sbjct: 412 RRSPSASKSPPAPKRAKSRSKSPPAPRRRRSPSQSKSPAPRRRRSPSKSPQAPRRRRSPS 471
Query: 633 AMRGFSPAPRRDLAAS 680
+ SP RR AA+
Sbjct: 472 GSKSRSPRRRRSPAAA 487
>Z78418-3|CAB01697.1| 932|Caenorhabditis elegans Hypothetical
protein F25D7.4 protein.
Length = 932
Score = 33.5 bits (73), Expect = 0.18
Identities = 35/106 (33%), Positives = 41/106 (38%), Gaps = 1/106 (0%)
Frame = +3
Query: 378 PCTAPPPDRQSST-GRPRTRHLIVPTGAERELHARAGHPAFRAEVLKRDPTPFHAPQPHG 554
P P R +ST G RTR + A R L +RA PA A R T A
Sbjct: 294 PVAGKPSTRSASTTGAARTRPAVPAVSAPRALTSRA--PAGPA----RPTTTRSATPATR 347
Query: 555 TPLPGHKTWPWPPTSPDPLTCGRRQPAMRGFSPAPRRDLAASAPNA 692
T +P T PP + R P +PAP R A AP A
Sbjct: 348 TAVPPRAT--APPKAAPASKAPTRAPIPARSAPAPPRGAPAKAPKA 391
>AF025467-5|AAB71038.2| 1115|Caenorhabditis elegans Hypothetical
protein R148.3a protein.
Length = 1115
Score = 32.7 bits (71), Expect = 0.32
Identities = 28/105 (26%), Positives = 40/105 (38%)
Frame = +3
Query: 372 EPPCTAPPPDRQSSTGRPRTRHLIVPTGAERELHARAGHPAFRAEVLKRDPTPFHAPQPH 551
+ P T P P ++ +L PT + +L A+A A + + D P+P
Sbjct: 294 QEPTTTPAP-LEAPAPVENAPNLPTPTFSVDDLMAQAARDALNSNSIVPDAPKVEEPEPA 352
Query: 552 GTPLPGHKTWPWPPTSPDPLTCGRRQPAMRGFSPAPRRDLAASAP 686
TP P P +P+ LT P PAP A AP
Sbjct: 353 PTPAPAPAEDPVVTPAPEELT---TPPPPAPPPPAPAVPEEAQAP 394
Score = 27.9 bits (59), Expect = 9.0
Identities = 26/88 (29%), Positives = 32/88 (36%), Gaps = 4/88 (4%)
Frame = +3
Query: 393 PPDRQSSTGRPRTRHLIVPTGAER--ELHARAGHPAFRAEVLK--RDPTPFHAPQPHGTP 560
P D SS R TR +P GAE + + P+ R R P FH P
Sbjct: 978 PLDGYSSMRRRSTRRSQLPFGAESPSDQEKKQAAPSHRRRSRSHGRQPPSFHDPYSMNPY 1037
Query: 561 LPGHKTWPWPPTSPDPLTCGRRQPAMRG 644
LPG + TS RQ + G
Sbjct: 1038 LPGSSDSSFMSTSQPQFLPLNRQHSRSG 1065
>U97002-4|AAB52267.1| 630|Caenorhabditis elegans Hypothetical
protein K09H11.4 protein.
Length = 630
Score = 32.3 bits (70), Expect = 0.42
Identities = 24/79 (30%), Positives = 33/79 (41%)
Frame = +3
Query: 462 RELHARAGHPAFRAEVLKRDPTPFHAPQPHGTPLPGHKTWPWPPTSPDPLTCGRRQPAMR 641
RE H R H ++EV ++ H PQ HG+P PG + PP P T GR +R
Sbjct: 511 REDHGREDHG--KSEVPEKVEHEQHPPQSHGSPHPGPQYQGPPPRKEFP-TPGRFVTNIR 567
Query: 642 GFSPAPRRDLAASAPNAGT 698
D + P +
Sbjct: 568 AKKSGEILDATTALPTTSS 586
>U58753-8|AAC24439.1| 633|Caenorhabditis elegans Hypothetical
protein W03B1.9 protein.
Length = 633
Score = 31.5 bits (68), Expect = 0.73
Identities = 20/65 (30%), Positives = 26/65 (40%), Gaps = 4/65 (6%)
Frame = +3
Query: 375 PPCTAPPPDRQSSTGRPRTRHLIVPTGAERELHARAGHPAFR----AEVLKRDPTPFHAP 542
PP PPP R+ S R R R + G R+ PA + V + D + P
Sbjct: 445 PPPPPPPPPRRRSRSRDRPRLVFSNIGGSARRRTRSAPPAIQDVPAVPVRRSDSMLTNPP 504
Query: 543 QPHGT 557
P GT
Sbjct: 505 SPVGT 509
>U58753-7|AAC24433.1| 581|Caenorhabditis elegans Hypothetical
protein W03B1.5 protein.
Length = 581
Score = 31.5 bits (68), Expect = 0.73
Identities = 20/65 (30%), Positives = 26/65 (40%), Gaps = 4/65 (6%)
Frame = +3
Query: 375 PPCTAPPPDRQSSTGRPRTRHLIVPTGAERELHARAGHPAFR----AEVLKRDPTPFHAP 542
PP PPP R+ S R R R + G R+ PA + V + D + P
Sbjct: 393 PPPPPPPPPRRRSRSRDRPRLVFSNIGGSARRRTRSAPPAIQDVPAVPVRRSDSMLTNPP 452
Query: 543 QPHGT 557
P GT
Sbjct: 453 SPVGT 457
>AF025467-4|AAN65300.1| 1130|Caenorhabditis elegans Hypothetical
protein R148.3b protein.
Length = 1130
Score = 31.5 bits (68), Expect = 0.73
Identities = 21/81 (25%), Positives = 33/81 (40%)
Frame = +3
Query: 372 EPPCTAPPPDRQSSTGRPRTRHLIVPTGAERELHARAGHPAFRAEVLKRDPTPFHAPQPH 551
+ P T P P ++ +L PT + +L A+A A + + D P+P
Sbjct: 294 QEPTTTPAP-LEAPAPVENAPNLPTPTFSVDDLMAQAARDALNSNSIVPDAPKVEEPEPA 352
Query: 552 GTPLPGHKTWPWPPTSPDPLT 614
TP P P +P+ LT
Sbjct: 353 PTPAPAPAEDPVVTPAPEELT 373
Score = 27.9 bits (59), Expect = 9.0
Identities = 26/88 (29%), Positives = 32/88 (36%), Gaps = 4/88 (4%)
Frame = +3
Query: 393 PPDRQSSTGRPRTRHLIVPTGAER--ELHARAGHPAFRAEVLK--RDPTPFHAPQPHGTP 560
P D SS R TR +P GAE + + P+ R R P FH P
Sbjct: 990 PLDGYSSMRRRSTRRSQLPFGAESPSDQEKKQAAPSHRRRSRSHGRQPPSFHDPYSMNPY 1049
Query: 561 LPGHKTWPWPPTSPDPLTCGRRQPAMRG 644
LPG + TS RQ + G
Sbjct: 1050 LPGSSDSSFMSTSQPQFLPLNRQHSRSG 1077
>U41108-2|AAQ23121.2| 639|Caenorhabditis elegans Tropomodulin
protein 2, isoform b protein.
Length = 639
Score = 30.7 bits (66), Expect = 1.3
Identities = 20/76 (26%), Positives = 31/76 (40%), Gaps = 2/76 (2%)
Frame = +3
Query: 417 GRPRTRHLIVPTGAERELHAR--AGHPAFRAEVLKRDPTPFHAPQPHGTPLPGHKTWPWP 590
GR + + + G + + R A AE L ++P P AP+P P P P
Sbjct: 228 GRHKVENATLRNGELKRVKRREAAQKARLEAEELAKNPVPKLAPEPKKEPEPKKMAPKIP 287
Query: 591 PTSPDPLTCGRRQPAM 638
P P L +P++
Sbjct: 288 PAVPKSLVSPEPKPSL 303
>AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical
protein F59E12.9 protein.
Length = 1621
Score = 30.7 bits (66), Expect = 1.3
Identities = 23/84 (27%), Positives = 30/84 (35%)
Frame = +3
Query: 372 EPPCTAPPPDRQSSTGRPRTRHLIVPTGAERELHARAGHPAFRAEVLKRDPTPFHAPQPH 551
+P + P P + SS R R T H +A H + R +P P P
Sbjct: 1288 QPSESCPAPPKNSSKKRNNRRGNRRNTNE----HIQANHEDSDSFSTSRSSSPSPPPPPP 1343
Query: 552 GTPLPGHKTWPWPPTSPDPLTCGR 623
P P P PP P P T +
Sbjct: 1344 PPPPPSDDLTPVPPPPPPPPTMSK 1367
>EF378622-1|ABN54457.1| 1492|Caenorhabditis elegans enhancer of glp-1
protein.
Length = 1492
Score = 30.3 bits (65), Expect = 1.7
Identities = 26/81 (32%), Positives = 29/81 (35%), Gaps = 3/81 (3%)
Frame = +3
Query: 321 ENPEGRHFGRYTVGGAQEPPCT---APPPDRQSSTGRPRTRHLIVPTGAERELHARAGHP 491
+ P G HFG + GA PP T AP P R P G + E H A P
Sbjct: 1085 QGPPGAHFGAH---GASAPPPTSYGAPTPQRPPQASYGAAPGAQGPPGGQFEAHGAAALP 1141
Query: 492 AFRAEVLKRDPTPFHAPQPHG 554
PT AP P G
Sbjct: 1142 ----------PTSHGAPTPQG 1152
>AL117201-3|CAL64007.1| 1512|Caenorhabditis elegans Hypothetical
protein Y53H1C.2a protein.
Length = 1512
Score = 30.3 bits (65), Expect = 1.7
Identities = 26/81 (32%), Positives = 29/81 (35%), Gaps = 3/81 (3%)
Frame = +3
Query: 321 ENPEGRHFGRYTVGGAQEPPCT---APPPDRQSSTGRPRTRHLIVPTGAERELHARAGHP 491
+ P G HFG + GA PP T AP P R P G + E H A P
Sbjct: 1105 QGPPGAHFGAH---GASAPPPTSYGAPTPQRPPQASYGAAPGAQGPPGGQFEAHGAAALP 1161
Query: 492 AFRAEVLKRDPTPFHAPQPHG 554
PT AP P G
Sbjct: 1162 ----------PTSHGAPTPQG 1172
>AC084154-11|AAK29874.1| 350|Caenorhabditis elegans Hypothetical
protein Y22D7AR.1 protein.
Length = 350
Score = 30.3 bits (65), Expect = 1.7
Identities = 16/50 (32%), Positives = 22/50 (44%)
Frame = +3
Query: 513 KRDPTPFHAPQPHGTPLPGHKTWPWPPTSPDPLTCGRRQPAMRGFSPAPR 662
K DP P P+P P P K P P P+P + +P + P P+
Sbjct: 180 KPDPKPKPKPKPKPKPKPNPKPEPKPKPKPEPKPKPKPEPKPKP-KPKPK 228
Score = 28.7 bits (61), Expect = 5.1
Identities = 14/34 (41%), Positives = 15/34 (44%)
Frame = +3
Query: 507 VLKRDPTPFHAPQPHGTPLPGHKTWPWPPTSPDP 608
VLK +P P P P P K P P PDP
Sbjct: 150 VLKNEPKLKSKPNPKPEPKPKPKPEPKPKPKPDP 183
Score = 27.9 bits (59), Expect = 9.0
Identities = 17/53 (32%), Positives = 23/53 (43%)
Frame = +3
Query: 513 KRDPTPFHAPQPHGTPLPGHKTWPWPPTSPDPLTCGRRQPAMRGFSPAPRRDL 671
K +P P P P P P HK P +P P R +P + P P+ +L
Sbjct: 274 KPNPKPEPNPMPELKPKPKHKPNSRPKPNPRPKPKPRSKPNPKP-KPRPKPEL 325
>Z73426-5|CAO78745.1| 1607|Caenorhabditis elegans Hypothetical protein
F40F11.2b protein.
Length = 1607
Score = 29.9 bits (64), Expect = 2.2
Identities = 27/99 (27%), Positives = 41/99 (41%), Gaps = 2/99 (2%)
Frame = +3
Query: 390 PPPDRQSSTGRPRTRHLIVPTGAERELHARAGHPAFRAEVLKRDPTPFHAPQPHGTPLPG 569
P PDR ++ RP++R PT +LH + +A + PT + P
Sbjct: 1142 PSPDRDVASSRPKSRTEPPPT--PEKLHVK-----IKASPAETTPTKLQLKEKSPAKTPV 1194
Query: 570 HKTWPWPP--TSPDPLTCGRRQPAMRGFSPAPRRDLAAS 680
KT P +P P +R+ A SPA ++ L S
Sbjct: 1195 FKTPLQTPIKMTPSPSESRKRRSAKIEDSPAQKKKLLNS 1233
>Z73426-4|CAA97793.3| 1593|Caenorhabditis elegans Hypothetical protein
F40F11.2a protein.
Length = 1593
Score = 29.9 bits (64), Expect = 2.2
Identities = 27/99 (27%), Positives = 41/99 (41%), Gaps = 2/99 (2%)
Frame = +3
Query: 390 PPPDRQSSTGRPRTRHLIVPTGAERELHARAGHPAFRAEVLKRDPTPFHAPQPHGTPLPG 569
P PDR ++ RP++R PT +LH + +A + PT + P
Sbjct: 1128 PSPDRDVASSRPKSRTEPPPT--PEKLHVK-----IKASPAETTPTKLQLKEKSPAKTPV 1180
Query: 570 HKTWPWPP--TSPDPLTCGRRQPAMRGFSPAPRRDLAAS 680
KT P +P P +R+ A SPA ++ L S
Sbjct: 1181 FKTPLQTPIKMTPSPSESRKRRSAKIEDSPAQKKKLLNS 1219
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 29.9 bits (64), Expect = 2.2
Identities = 17/46 (36%), Positives = 18/46 (39%)
Frame = +3
Query: 522 PTPFHAPQPHGTPLPGHKTWPWPPTSPDPLTCGRRQPAMRGFSPAP 659
PTP P+P P G WPP P P P M G P P
Sbjct: 279 PTPGMTPRPPPPPSSGM----WPPPPPPPPGRTPGPPGMPGMPPPP 320
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 29.9 bits (64), Expect = 2.2
Identities = 17/46 (36%), Positives = 18/46 (39%)
Frame = +3
Query: 522 PTPFHAPQPHGTPLPGHKTWPWPPTSPDPLTCGRRQPAMRGFSPAP 659
PTP P+P P G WPP P P P M G P P
Sbjct: 289 PTPGMTPRPPPPPSSGM----WPPPPPPPPGRTPGPPGMPGMPPPP 330
>L15188-9|AAM22024.1| 618|Caenorhabditis elegans Hypothetical
protein C14B9.2 protein.
Length = 618
Score = 29.9 bits (64), Expect = 2.2
Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Frame = +1
Query: 322 KIPKDVISGDTPWAAHRSHLAPPHHRTDSRV--PGAPAPAT 438
K P ++ PW H HLAP + + S+V P A AT
Sbjct: 52 KNPSVLVKFYAPWCGHCKHLAPEYEKASSKVSIPLAKVDAT 92
>AF026212-3|AAF99974.2| 1172|Caenorhabditis elegans Hypothetical
protein F52G3.1 protein.
Length = 1172
Score = 29.9 bits (64), Expect = 2.2
Identities = 22/81 (27%), Positives = 30/81 (37%), Gaps = 1/81 (1%)
Frame = +3
Query: 360 GGAQEPPCTAPPPDRQSSTGRPRTRHLIVPTGAERELHAR-AGHPAFRAEVLKRDPTPFH 536
GG +PP T DR+ S +T H P +E R G + + + +K
Sbjct: 325 GGEIKPP-TVAKQDREKSVQEAKTSHPPAPVKPPKEKKLRKEGKSSKKEKDVKEKKQTVP 383
Query: 537 APQPHGTPLPGHKTWPWPPTS 599
P P P P PP S
Sbjct: 384 PPNPGPAPAPAPIAIDTPPAS 404
>AF022985-10|AAB69961.1| 325|Caenorhabditis elegans Collagen
protein 142 protein.
Length = 325
Score = 29.5 bits (63), Expect = 2.9
Identities = 37/124 (29%), Positives = 44/124 (35%), Gaps = 4/124 (3%)
Frame = +3
Query: 285 TRPDDKTGFHLRENPEGRHFGRYTVGGAQEPPCTAPPPDRQSSTGRPRTR-H--LIVPTG 455
TRP + F L N GAQ C A PP G P + H L G
Sbjct: 61 TRPSSGSSFLLGRNKRQAQCNC----GAQSRGCPAGPPGPPGQPGAPGEQGHPGLAGQPG 116
Query: 456 AERELHARAGHPAFRAEVLKRDPTPFHAPQPHGTP-LPGHKTWPWPPTSPDPLTCGRRQP 632
+ ++ G P F P AP P G P PG K P +P + GR P
Sbjct: 117 SGARINPATGRPGFCI------TCPAGAPGPAGPPGAPGPKGNNGQPGAP-AQSGGRGPP 169
Query: 633 AMRG 644
RG
Sbjct: 170 GPRG 173
>AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical
protein Y48G9A.4 protein.
Length = 1115
Score = 29.5 bits (63), Expect = 2.9
Identities = 25/89 (28%), Positives = 34/89 (38%)
Frame = +3
Query: 366 AQEPPCTAPPPDRQSSTGRPRTRHLIVPTGAERELHARAGHPAFRAEVLKRDPTPFHAPQ 545
AQ+ P T PPP + R+ P A + + P A +L + T P
Sbjct: 504 AQKSPPTPPPPAPGPHKEQRRSTSKDPPRPAPPPVSSIPPPPPI-AGLLAANGTNVPIPP 562
Query: 546 PHGTPLPGHKTWPWPPTSPDPLTCGRRQP 632
P PLP + + PP P P G P
Sbjct: 563 PPPPPLPQNLSGAPPPPPPPPPMLGGPPP 591
>U50191-3|AAK31557.1| 380|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 2 protein.
Length = 380
Score = 29.1 bits (62), Expect = 3.9
Identities = 28/98 (28%), Positives = 32/98 (32%), Gaps = 10/98 (10%)
Frame = +3
Query: 345 GRYTVGG---AQEPPCTAPPPDRQSSTGRPRTRHLIVPTGAERELHARAGHPAFRAEVLK 515
G Y +GG + P P G P I G E H G P
Sbjct: 189 GEYGIGGRPGSDGMPGKPGDPGLAGPIGPPGESGPIGDKGRTPEAHVIPGPPGDSGL--- 245
Query: 516 RDPTPFHAPQPHGTP-------LPGHKTWPWPPTSPDP 608
P P+ P G P PG K WP PP +P P
Sbjct: 246 --PGPWGPPGSAGMPGEDGYAGTPGEKGWPGPPGAPGP 281
>U41017-1|AAC48211.1| 343|Caenorhabditis elegans Hypothetical
protein T26C11.2 protein.
Length = 343
Score = 29.1 bits (62), Expect = 3.9
Identities = 13/40 (32%), Positives = 18/40 (45%)
Frame = +3
Query: 513 KRDPTPFHAPQPHGTPLPGHKTWPWPPTSPDPLTCGRRQP 632
K P PF P P+P K P+P P P+ + +P
Sbjct: 189 KHKPKPFPKPMLFPKPMPIPKPMPFPKPMPKPMPKHKPKP 228
Score = 28.7 bits (61), Expect = 5.1
Identities = 12/37 (32%), Positives = 17/37 (45%)
Frame = +3
Query: 522 PTPFHAPQPHGTPLPGHKTWPWPPTSPDPLTCGRRQP 632
P P P+P P+P HK P+P P + +P
Sbjct: 38 PKPMPKPKPKPKPMPKHKPKPFPKPMLFPKPMPKHKP 74
Score = 28.7 bits (61), Expect = 5.1
Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
Frame = +3
Query: 522 PTPFHAPQPHGTPLPGHKTWPWPPTS--PDPLTCGRRQP 632
P P P+P P+P HK P+P P P+ + P
Sbjct: 174 PKPMPKPKPKPKPMPKHKPKPFPKPMLFPKPMPIPKPMP 212
Score = 27.9 bits (59), Expect = 9.0
Identities = 14/42 (33%), Positives = 18/42 (42%), Gaps = 2/42 (4%)
Frame = +3
Query: 513 KRDPTPFHAPQPHGTPLPGHKTWPWPPTS--PDPLTCGRRQP 632
K P PF P P+P HK P+P P P+ + P
Sbjct: 53 KHKPKPFPKPMLFPKPMPKHKPKPFPKPMLFPKPMPFPKPMP 94
Score = 27.9 bits (59), Expect = 9.0
Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Frame = +3
Query: 513 KRDPTPFHAPQPHGTPLPGHKTWPWPPTS--PDPLTCGRRQP 632
K +P P P P P+P HK P+P P P+ + P
Sbjct: 99 KSEPFPNPMPFPKPKPMPKHKPKPFPKPMLFPKPMPIPKPMP 140
Score = 27.9 bits (59), Expect = 9.0
Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
Frame = +3
Query: 522 PTPFHAPQPHGTPLPGHKTWPWPPTS--PDPLTCGRRQP 632
P P P+P P+P HK P+P P P+ + P
Sbjct: 208 PKPMPFPKPMPKPMPKHKPKPFPKPMLFPKPMPIPKPMP 246
>L12706-1|AAA17398.2| 360|Caenorhabditis elegans collagen protein.
Length = 360
Score = 29.1 bits (62), Expect = 3.9
Identities = 28/98 (28%), Positives = 32/98 (32%), Gaps = 10/98 (10%)
Frame = +3
Query: 345 GRYTVGG---AQEPPCTAPPPDRQSSTGRPRTRHLIVPTGAERELHARAGHPAFRAEVLK 515
G Y +GG + P P G P I G E H G P
Sbjct: 189 GEYGIGGRPGSDGMPGKPGDPGLAGPIGPPGESGPIGDKGRTPEAHVIPGPPGDSGL--- 245
Query: 516 RDPTPFHAPQPHGTP-------LPGHKTWPWPPTSPDP 608
P P+ P G P PG K WP PP +P P
Sbjct: 246 --PGPWGPPGSAGMPGEDGYAGTPGEKGWPGPPGAPGP 281
>AY349014-1|AAQ55494.1| 583|Caenorhabditis elegans NHR-41A protein.
Length = 583
Score = 29.1 bits (62), Expect = 3.9
Identities = 17/47 (36%), Positives = 21/47 (44%)
Frame = +3
Query: 429 TRHLIVPTGAERELHARAGHPAFRAEVLKRDPTPFHAPQPHGTPLPG 569
+R LI PT ++E H P PT F PQ TP+PG
Sbjct: 20 SRSLIAPTAIKQESHLIPSTPG--------TPTAFQPPQHANTPIPG 58
>AF025466-2|AAB71033.1| 261|Caenorhabditis elegans Hypothetical
protein T23F4.1 protein.
Length = 261
Score = 29.1 bits (62), Expect = 3.9
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = +3
Query: 534 HAPQPHGTPLPGHKTWPWPPTSPDPLTCGRRQPAMRGF 647
+A H LPG + W P + DP+ R AM+ F
Sbjct: 217 YAHAVHAFTLPGVENWEIPGAAFDPIASNRSWSAMKSF 254
>AC006699-1|ABA00171.1| 160|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 41 protein.
Length = 160
Score = 29.1 bits (62), Expect = 3.9
Identities = 17/47 (36%), Positives = 21/47 (44%)
Frame = +3
Query: 429 TRHLIVPTGAERELHARAGHPAFRAEVLKRDPTPFHAPQPHGTPLPG 569
+R LI PT ++E H P PT F PQ TP+PG
Sbjct: 62 SRSLIAPTAIKQESHLIPSTPG--------TPTAFQPPQHANTPIPG 100
>Z98866-8|CAB11562.2| 425|Caenorhabditis elegans Hypothetical
protein Y49E10.10 protein.
Length = 425
Score = 28.7 bits (61), Expect = 5.1
Identities = 28/105 (26%), Positives = 38/105 (36%), Gaps = 6/105 (5%)
Frame = +3
Query: 366 AQEPPCT-APPPDRQSSTGRPRTRH---LIVPTGAERELHARAGHPAFRAEVLKRDPT-- 527
A PP T APPP + P T + P + A A +P + T
Sbjct: 190 APPPPTTKAPPPPTTKAPPPPTTNKEVTTVAPVPKPAPVTAPAPNPPAPENTTAKVETTK 249
Query: 528 PFHAPQPHGTPLPGHKTWPWPPTSPDPLTCGRRQPAMRGFSPAPR 662
P A P TP+P P PP + +T + PAP+
Sbjct: 250 PTKAAPPAPTPVPNPVPSPPPPPANTTVTEEKTTVPPATDEPAPK 294
>Z82287-4|CAB05314.1| 433|Caenorhabditis elegans Hypothetical
protein ZK550.4 protein.
Length = 433
Score = 28.7 bits (61), Expect = 5.1
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = -2
Query: 684 EHSRRDLVAVLGRNLSLRAVVARMLEDQGSWEAMARFCDLV 562
E DL+ V GR L L + RM+E++ S +C +V
Sbjct: 378 ESEEEDLIHVAGRALPLSQITPRMVENEMSELEKESYCSVV 418
>Y08816-1|CAA70050.2| 433|Caenorhabditis elegans TFIIE-alpha
protein protein.
Length = 433
Score = 28.7 bits (61), Expect = 5.1
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = -2
Query: 684 EHSRRDLVAVLGRNLSLRAVVARMLEDQGSWEAMARFCDLV 562
E DL+ V GR L L + RM+E++ S +C +V
Sbjct: 378 ESEEEDLIHVAGRALPLSQITPRMVENEMSELEKESYCSVV 418
>Z68219-2|CAA92476.1| 300|Caenorhabditis elegans Hypothetical
protein T05A1.2 protein.
Length = 300
Score = 28.3 bits (60), Expect = 6.8
Identities = 30/106 (28%), Positives = 35/106 (33%), Gaps = 2/106 (1%)
Frame = +3
Query: 375 PPCTAPPPDRQSSTGRPRTRHLIVPTGAERELHARAGHPAFRAEVLKRDPTPFHA-PQPH 551
PPC A PP + G P P G G P + P P
Sbjct: 144 PPCPACPPGPPGAPGAPGKPGSEGPPGPPGH-DGPNGGPGQPGQPGPHGPNGHPGKPGSQ 202
Query: 552 GTP-LPGHKTWPWPPTSPDPLTCGRRQPAMRGFSPAPRRDLAASAP 686
G P PGH P P P G R P RG + +D A +P
Sbjct: 203 GPPGPPGHSDEPKPGQPGQPGRAGPRGP--RGVAGIKGKDGAPGSP 246
>Z47357-12|CAA87429.2| 205|Caenorhabditis elegans Hypothetical
protein ZK1128.7 protein.
Length = 205
Score = 28.3 bits (60), Expect = 6.8
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +1
Query: 211 HRAPPHRLHQTYGTAVRAESPPSPVPV 291
HR PP + + +Y T + P SP PV
Sbjct: 65 HRGPPDQSYDSYYTKITESRPRSPGPV 91
>Z46791-5|CAA86755.2| 948|Caenorhabditis elegans Hypothetical
protein C09G5.6 protein.
Length = 948
Score = 28.3 bits (60), Expect = 6.8
Identities = 12/31 (38%), Positives = 14/31 (45%)
Frame = +1
Query: 184 PAERLPTKPHRAPPHRLHQTYGTAVRAESPP 276
P + P PHR PH L+ VR PP
Sbjct: 643 PPPKRPPPPHRQTPHELYPEEQPYVRRPPPP 673
>Z30974-3|CAA83227.2| 205|Caenorhabditis elegans Hypothetical
protein ZK1128.7 protein.
Length = 205
Score = 28.3 bits (60), Expect = 6.8
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +1
Query: 211 HRAPPHRLHQTYGTAVRAESPPSPVPV 291
HR PP + + +Y T + P SP PV
Sbjct: 65 HRGPPDQSYDSYYTKITESRPRSPGPV 91
>Z73102-2|CAB63428.1| 341|Caenorhabditis elegans Hypothetical
protein B0035.1b protein.
Length = 341
Score = 27.9 bits (59), Expect = 9.0
Identities = 27/88 (30%), Positives = 32/88 (36%), Gaps = 7/88 (7%)
Frame = +3
Query: 444 VPTGAERELHARAGHPAFRAEVLKRDPTPFHAPQPHGTPLPGHKTWPWPPTSPD------ 605
+P+GA R A R+ + P P P P P PG P P P
Sbjct: 85 IPSGAYRGA-ADEEPDEKRSRMDNGPPMPTPMPFPQHFPFPGMPPMPSGPPPPSMAYGMP 143
Query: 606 PLTCGRRQP-AMRGFSPAPRRDLAASAP 686
P+ G P M G P PR A AP
Sbjct: 144 PMPSGMMPPRGMPGAYPPPRGYPPAPAP 171
>Z73102-1|CAA97419.1| 298|Caenorhabditis elegans Hypothetical
protein B0035.1a protein.
Length = 298
Score = 27.9 bits (59), Expect = 9.0
Identities = 27/88 (30%), Positives = 32/88 (36%), Gaps = 7/88 (7%)
Frame = +3
Query: 444 VPTGAERELHARAGHPAFRAEVLKRDPTPFHAPQPHGTPLPGHKTWPWPPTSPD------ 605
+P+GA R A R+ + P P P P P PG P P P
Sbjct: 85 IPSGAYRGA-ADEEPDEKRSRMDNGPPMPTPMPFPQHFPFPGMPPMPSGPPPPSMAYGMP 143
Query: 606 PLTCGRRQP-AMRGFSPAPRRDLAASAP 686
P+ G P M G P PR A AP
Sbjct: 144 PMPSGMMPPRGMPGAYPPPRGYPPAPAP 171
>Z66495-4|CAA91271.1| 954|Caenorhabditis elegans Hypothetical
protein C36A4.5 protein.
Length = 954
Score = 27.9 bits (59), Expect = 9.0
Identities = 32/107 (29%), Positives = 36/107 (33%), Gaps = 2/107 (1%)
Frame = +3
Query: 378 PCTAPPPDRQSST-GRPRTRHLIVPTGAERELHARA-GHPAFRAEVLKRDPTPFHAPQPH 551
P P R +ST G RTR I A R L +RA PA P A P
Sbjct: 316 PVAGKPSTRSASTTGAARTRPAIPAVSAPRALTSRAPTGPACPTTTRSAAPATRTAVPPR 375
Query: 552 GTPLPGHKTWPWPPTSPDPLTCGRRQPAMRGFSPAPRRDLAASAPNA 692
T PP + R P +PAP R A A A
Sbjct: 376 ATA---------PPKAASASKAPIRAPIPAKSAPAPPRGAPAKAAKA 413
>U39745-4|AAA80446.1| 325|Caenorhabditis elegans Collagen protein
173 protein.
Length = 325
Score = 27.9 bits (59), Expect = 9.0
Identities = 26/98 (26%), Positives = 33/98 (33%)
Frame = +3
Query: 291 PDDKTGFHLRENPEGRHFGRYTVGGAQEPPCTAPPPDRQSSTGRPRTRHLIVPTGAEREL 470
P +TG P+G + + G + PP A P Q GR + PTG E E
Sbjct: 227 PPGETGDEGEGGPDGIPMEKKSPPGPRGPPGPAGPDGPQGPEGRSGKQGPPGPTGQEGE- 285
Query: 471 HARAGHPAFRAEVLKRDPTPFHAPQPHGTPLPGHKTWP 584
G P E K P P +T P
Sbjct: 286 EGVIGEPGKPGEPGKSGAAGARGPAGPCNHCPNPRTAP 323
>U23515-13|AAK21453.1| 823|Caenorhabditis elegans Hypothetical
protein R144.2a protein.
Length = 823
Score = 27.9 bits (59), Expect = 9.0
Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 4/65 (6%)
Frame = +1
Query: 175 STCPAERLPTKPH-RAPPHRLHQTYGTAVRAESPP-SPVPVLMIRRDFISGKI--PKDVI 342
S+ P + P + H + PP +HQ G SPP P P++ ++ + P++V
Sbjct: 340 SSAPPFQHPQQHHPQLPPPPVHQGMGRGYHHNSPPQDPAPIVPVQAPPPQQHLPAPENVY 399
Query: 343 SGDTP 357
S + P
Sbjct: 400 SSEQP 404
>AF098985-5|AAC67418.1| 99|Caenorhabditis elegans Hypothetical
protein C08G5.5 protein.
Length = 99
Score = 27.9 bits (59), Expect = 9.0
Identities = 18/65 (27%), Positives = 24/65 (36%), Gaps = 2/65 (3%)
Frame = +3
Query: 501 AEVLKRDPTPFHAPQPHGTPLPGHKTWPWPPTSPDPLTCG--RRQPAMRGFSPAPRRDLA 674
A + R+P H P P G P +++ P P + G P R SP P
Sbjct: 29 AREMAREPLVTHLPPPSGLPPMVSESYSAPYAQAPPTSTGYPSAPPMPRPSSPPPAYSAI 88
Query: 675 ASAPN 689
PN
Sbjct: 89 YKPPN 93
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,649,678
Number of Sequences: 27780
Number of extensions: 499544
Number of successful extensions: 2257
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 1652
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2095
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1966828226
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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