Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_C12
         (805 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    25   0.82 
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    25   0.82 
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    24   1.4  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    23   3.3  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    23   4.4  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    22   7.7  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    22   7.7  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 25.0 bits (52), Expect = 0.82
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +3

Query: 357 VGGAQEPPCTAPPPDRQSSTG 419
           +G +  PP  APPP   SS+G
Sbjct: 332 LGDSDTPPKPAPPPPPPSSSG 352


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 25.0 bits (52), Expect = 0.82
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = +3

Query: 93  PERKRGTRRSSTSPNSSQETTP*KRR 170
           P  K        SPNS++ETTP K R
Sbjct: 770 PVIKPANVNKEQSPNSTKETTPKKER 795


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +1

Query: 367 HRSHLAPPHHRTDSRVPGAPAPA 435
           H SH A PHH+  + +  +  PA
Sbjct: 433 HHSHAATPHHQHSTPLAHSSYPA 455


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +2

Query: 227 TGYTRHTVPQCAPKVRL 277
           +G    TVP CAPK+ +
Sbjct: 141 SGLVNRTVPVCAPKLHV 157


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 8/10 (80%), Positives = 9/10 (90%)
 Frame = +1

Query: 652 QHRDEISPRV 681
           QHRD +SPRV
Sbjct: 730 QHRDSLSPRV 739


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = -1

Query: 91  GAGVRHNPVRYPP 53
           G G  H+P ++PP
Sbjct: 397 GTGREHDPAKFPP 409


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = +3

Query: 63  RTGLCRTPAPPERKRGTRRSSTSPNSSQETT 155
           R  L +TP PP+  R  +  S S +  +  T
Sbjct: 556 RASLSKTPQPPQCPRFRKLDSPSDSGIESGT 586


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 243,119
Number of Sequences: 438
Number of extensions: 6511
Number of successful extensions: 14
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25489170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)