Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_C10
         (834 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_05_0062 + 18749405-18749449,18751328-18751465,18752625-187526...    30   2.0  
02_01_0072 - 502785-504038                                             28   8.0  

>11_05_0062 +
           18749405-18749449,18751328-18751465,18752625-18752675,
           18752905-18753014,18753483-18753522,18753758-18753807,
           18754066-18754114,18754212-18754256
          Length = 175

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 16/43 (37%), Positives = 22/43 (51%)
 Frame = -1

Query: 354 AALLVCYVALRFLGTNTVSAYHRARVYGLKILTEPFADVQDSE 226
           AA LV YV++ FL   TV  Y    V GL++       ++D E
Sbjct: 100 AANLVLYVSIHFLSKLTVQPYKGGSVVGLRMEDNMMYPIKDQE 142


>02_01_0072 - 502785-504038
          Length = 417

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 15/34 (44%), Positives = 16/34 (47%)
 Frame = -3

Query: 481 VHVVAXGRAPRPLSPRSPGPAAGAWALAQLYPSS 380
           VH +A   AP P SP S  P AG      LY  S
Sbjct: 199 VHAMAAHLAPPPQSPTSASPGAGCGLGLALYTMS 232


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,047,402
Number of Sequences: 37544
Number of extensions: 238348
Number of successful extensions: 666
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 649
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 666
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2303447664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)