Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_C09
         (908 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_03_0146 - 14835236-14835445,14835525-14835714,14836740-14837269     31   1.7  
07_01_0004 + 35300-35533,35617-35732,39044-39287,39451-40578,406...    29   5.1  
06_03_0108 - 16732215-16732572,16732623-16732741,16733344-167333...    29   5.1  
03_05_0958 - 29200048-29200731                                         29   5.1  
02_05_0040 + 25341418-25341810                                         29   5.1  
12_02_0954 - 24757417-24758214                                         29   6.7  
07_03_0658 - 20366559-20367562,20367745-20367937                       29   6.7  
06_01_0464 - 3300356-3300673,3300757-3301244,3301315-3302137           29   6.7  

>03_03_0146 - 14835236-14835445,14835525-14835714,14836740-14837269
          Length = 309

 Score = 30.7 bits (66), Expect = 1.7
 Identities = 13/20 (65%), Positives = 13/20 (65%)
 Frame = +2

Query: 44  WAPRRDTLERPRPAARAHGA 103
           WA RR    RPRPA RA GA
Sbjct: 102 WAERRAASRRPRPAPRAEGA 121


>07_01_0004 +
           35300-35533,35617-35732,39044-39287,39451-40578,
           40657-40833
          Length = 632

 Score = 29.1 bits (62), Expect = 5.1
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = -3

Query: 540 YRTSLYKKAGWYRSGIPRALCDIHCAGADSLSLISWW 430
           Y+TSL  + G ++ G+PR  C    AG D L     W
Sbjct: 285 YQTSLSPRCGAFKDGVPRMSC-AKIAGRDKLKRRGDW 320


>06_03_0108 -
           16732215-16732572,16732623-16732741,16733344-16733393,
           16734619-16734820
          Length = 242

 Score = 29.1 bits (62), Expect = 5.1
 Identities = 15/30 (50%), Positives = 17/30 (56%)
 Frame = +3

Query: 609 RLESGGWIGPGVFYGGQNSVDGVSRRSDGS 698
           R  SGG  GP V YGG+    GV R+ D S
Sbjct: 140 RRGSGG-TGPAVDYGGRGDSGGVRRKEDSS 168


>03_05_0958 - 29200048-29200731
          Length = 227

 Score = 29.1 bits (62), Expect = 5.1
 Identities = 16/37 (43%), Positives = 21/37 (56%)
 Frame = +3

Query: 585 KLLSVPRPRLESGGWIGPGVFYGGQNSVDGVSRRSDG 695
           +L+   R R +SGG  G G    G +S DG S+ SDG
Sbjct: 150 RLIEYVRSRNKSGGGGGGGGVAAGCSSSDGDSKSSDG 186


>02_05_0040 + 25341418-25341810
          Length = 130

 Score = 29.1 bits (62), Expect = 5.1
 Identities = 15/33 (45%), Positives = 17/33 (51%)
 Frame = +1

Query: 118 RRAAPA*SCGHSRSEMSASRRRLSAPNAYDSPP 216
           RRAAP   CG S+   S  +RR  AP    S P
Sbjct: 74  RRAAPRRRCGGSKRRCSGPQRRRGAPRRRCSGP 106


>12_02_0954 - 24757417-24758214
          Length = 265

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
 Frame = +2

Query: 62  TLERPRPAARAHGAIVLAVGEQRLPEAAG---IPDQK*APVVVGSRH 193
           T +RPRP+  A  A+  A+       A+G      Q+ AP VV S+H
Sbjct: 100 TRKRPRPSRPARAAVAAAIAAAAAASASGSQIAAQQQQAPPVVMSQH 146


>07_03_0658 - 20366559-20367562,20367745-20367937
          Length = 398

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 16/56 (28%), Positives = 23/56 (41%)
 Frame = +2

Query: 173 VVVGSRHRMRMILRQHGFGQCVEQRPLVPEVPVKRRLLNPQPFRQFACRQTVYADL 340
           V+ G+ H + M L +HG    V  + L+P        L    FRQ       + DL
Sbjct: 251 VIPGTEHALNMRLTEHGLDGHVSIKDLIPLAAANADELLSDAFRQLGLAGVEWNDL 306


>06_01_0464 - 3300356-3300673,3300757-3301244,3301315-3302137
          Length = 542

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = -3

Query: 603 AGRITISHRKQL*P-LGLFR*HYRTSLYKKAGWY 505
           AG + +SH   + P L +FR  ++  L+K  GWY
Sbjct: 130 AGFLVLSHHAGVPPSLAVFRHFFKLCLFKSNGWY 163


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,106,688
Number of Sequences: 37544
Number of extensions: 592806
Number of successful extensions: 1490
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1441
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1489
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2577242800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)