Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_T7_C08
(871 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_UPI0000E4A5C1 Cluster: PREDICTED: similar to DNA repair... 44 0.007
UniRef50_UPI000065DA99 Cluster: DNA-repair protein XRCC1 (X-ray ... 40 0.082
UniRef50_Q60596 Cluster: DNA-repair protein XRCC1; n=22; Deutero... 38 0.33
UniRef50_P18887 Cluster: DNA-repair protein XRCC1; n=11; Tetrapo... 36 1.8
UniRef50_P65973 Cluster: Recombination-associated protein rdgC; ... 34 4.1
UniRef50_Q9UB07 Cluster: DNA repair protein XRCC1; n=4; Sophopho... 34 5.4
UniRef50_Q5KN84 Cluster: Sporulation-related protein, putative; ... 34 5.4
UniRef50_UPI0000D55DE3 Cluster: PREDICTED: similar to X-ray repa... 33 9.4
>UniRef50_UPI0000E4A5C1 Cluster: PREDICTED: similar to DNA repair
protein; n=4; Strongylocentrotus purpuratus|Rep:
PREDICTED: similar to DNA repair protein -
Strongylocentrotus purpuratus
Length = 512
Score = 43.6 bits (98), Expect = 0.007
Identities = 23/60 (38%), Positives = 32/60 (53%)
Frame = -1
Query: 676 TRARPPRGXXXGLDARAWRFVLSGYQNPLRQELPPXRGSRWGRAGSPSGGPACTHLICAF 497
++ +P G G + FV+SG+Q+PLR EL + + G GP THLICAF
Sbjct: 208 SKPQPATGEAFGKLMKKVVFVMSGFQHPLRGEL-RKKATEMGAKYQADWGPGATHLICAF 266
>UniRef50_UPI000065DA99 Cluster: DNA-repair protein XRCC1 (X-ray
repair cross-complementing protein 1).; n=1; Takifugu
rubripes|Rep: DNA-repair protein XRCC1 (X-ray repair
cross-complementing protein 1). - Takifugu rubripes
Length = 542
Score = 39.9 bits (89), Expect = 0.082
Identities = 21/41 (51%), Positives = 23/41 (56%)
Frame = -1
Query: 619 FVLSGYQNPLRQELPPXRGSRWGRAGSPSGGPACTHLICAF 497
FVLSG+QNP R EL + G P P THLICAF
Sbjct: 281 FVLSGFQNPFRGEL-REKALEMGAKYRPDWTPDSTHLICAF 320
>UniRef50_Q60596 Cluster: DNA-repair protein XRCC1; n=22;
Deuterostomia|Rep: DNA-repair protein XRCC1 - Mus
musculus (Mouse)
Length = 631
Score = 37.9 bits (84), Expect = 0.33
Identities = 20/40 (50%), Positives = 22/40 (55%)
Frame = -1
Query: 616 VLSGYQNPLRQELPPXRGSRWGRAGSPSGGPACTHLICAF 497
VLSG+QNP R EL + G P P THLICAF
Sbjct: 326 VLSGFQNPFRSEL-RDKALELGAKYRPDWTPDSTHLICAF 364
>UniRef50_P18887 Cluster: DNA-repair protein XRCC1; n=11;
Tetrapoda|Rep: DNA-repair protein XRCC1 - Homo sapiens
(Human)
Length = 633
Score = 35.5 bits (78), Expect = 1.8
Identities = 25/63 (39%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
Frame = -1
Query: 679 GTRARPPRGXXXGLDA--RAWRFVLSGYQNPLRQELPPXRGSRWGRAGSPSGGPACTHLI 506
GT R PR L + VLSG+QNP R EL + G P THLI
Sbjct: 303 GTEPRRPRAGPEELGKILQGVVVVLSGFQNPFRSEL-RDKALELGAKYRPDWTRDSTHLI 361
Query: 505 CAF 497
CAF
Sbjct: 362 CAF 364
>UniRef50_P65973 Cluster: Recombination-associated protein rdgC;
n=50; root|Rep: Recombination-associated protein rdgC -
Salmonella typhimurium
Length = 303
Score = 34.3 bits (75), Expect = 4.1
Identities = 13/29 (44%), Positives = 20/29 (68%)
Frame = -1
Query: 220 GRVLQKSQLDEDSRVDYVVCDDGAAPRIK 134
G+V+ K LD R+ +V+CDDG+ R+K
Sbjct: 226 GKVVTKLALDWQQRIQFVMCDDGSIKRLK 254
>UniRef50_Q9UB07 Cluster: DNA repair protein XRCC1; n=4;
Sophophora|Rep: DNA repair protein XRCC1 - Drosophila
melanogaster (Fruit fly)
Length = 614
Score = 33.9 bits (74), Expect = 5.4
Identities = 18/40 (45%), Positives = 21/40 (52%)
Frame = -1
Query: 616 VLSGYQNPLRQELPPXRGSRWGRAGSPSGGPACTHLICAF 497
V+SG QNP R +L + G G CTHLICAF
Sbjct: 431 VISGIQNPDRADLRS-KAVALGAKYKADWGSGCTHLICAF 469
>UniRef50_Q5KN84 Cluster: Sporulation-related protein, putative;
n=1; Filobasidiella neoformans|Rep: Sporulation-related
protein, putative - Cryptococcus neoformans
(Filobasidiella neoformans)
Length = 1073
Score = 33.9 bits (74), Expect = 5.4
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = -1
Query: 202 SQLDEDSRVDY-VVCDDGAAPRIKGRAVTAAWLWKCHQQRKL 80
S LDE D+ V+CDDG + + ++ W W Q+R+L
Sbjct: 413 SMLDEKLASDFEVICDDGRRVKCSRKILSERWPWFAEQEREL 454
>UniRef50_UPI0000D55DE3 Cluster: PREDICTED: similar to X-ray repair
complementing defective repair in Chinese hamster cells
1; n=1; Tribolium castaneum|Rep: PREDICTED: similar to
X-ray repair complementing defective repair in Chinese
hamster cells 1 - Tribolium castaneum
Length = 533
Score = 33.1 bits (72), Expect = 9.4
Identities = 19/45 (42%), Positives = 21/45 (46%)
Frame = -1
Query: 631 RAWRFVLSGYQNPLRQELPPXRGSRWGRAGSPSGGPACTHLICAF 497
R V+SG QNP R L G P +CTHLICAF
Sbjct: 284 RGVTLVISGIQNPDRGNLRTM-ALEMGAKYKPDWDNSCTHLICAF 327
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 562,460,189
Number of Sequences: 1657284
Number of extensions: 8314334
Number of successful extensions: 26765
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 25476
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26753
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 77472727479
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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