Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_C08
         (871 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ010073-1|CAB45234.1|  614|Drosophila melanogaster XRCC1 protei...    34   0.29 
AF132142-1|AAD33589.1|  614|Drosophila melanogaster DNA repair p...    34   0.29 
AE014298-727|AAF46025.1|  614|Drosophila melanogaster CG4208-PA ...    34   0.29 
AF160940-1|AAD46880.1| 1260|Drosophila melanogaster BcDNA.LD1916...    29   8.3  
AE014297-55|AAF52146.1| 1260|Drosophila melanogaster CG9776-PA, ...    29   8.3  

>AJ010073-1|CAB45234.1|  614|Drosophila melanogaster XRCC1 protein
           protein.
          Length = 614

 Score = 33.9 bits (74), Expect = 0.29
 Identities = 18/40 (45%), Positives = 21/40 (52%)
 Frame = -1

Query: 616 VLSGYQNPLRQELPPXRGSRWGRAGSPSGGPACTHLICAF 497
           V+SG QNP R +L   +    G       G  CTHLICAF
Sbjct: 431 VISGIQNPDRADLRS-KAVALGAKYKADWGSGCTHLICAF 469


>AF132142-1|AAD33589.1|  614|Drosophila melanogaster DNA repair
           protein XRCC1 protein.
          Length = 614

 Score = 33.9 bits (74), Expect = 0.29
 Identities = 18/40 (45%), Positives = 21/40 (52%)
 Frame = -1

Query: 616 VLSGYQNPLRQELPPXRGSRWGRAGSPSGGPACTHLICAF 497
           V+SG QNP R +L   +    G       G  CTHLICAF
Sbjct: 431 VISGIQNPDRADLRS-KAVALGAKYKADWGSGCTHLICAF 469


>AE014298-727|AAF46025.1|  614|Drosophila melanogaster CG4208-PA
           protein.
          Length = 614

 Score = 33.9 bits (74), Expect = 0.29
 Identities = 18/40 (45%), Positives = 21/40 (52%)
 Frame = -1

Query: 616 VLSGYQNPLRQELPPXRGSRWGRAGSPSGGPACTHLICAF 497
           V+SG QNP R +L   +    G       G  CTHLICAF
Sbjct: 431 VISGIQNPDRADLRS-KAVALGAKYKADWGSGCTHLICAF 469


>AF160940-1|AAD46880.1| 1260|Drosophila melanogaster BcDNA.LD19168
           protein.
          Length = 1260

 Score = 29.1 bits (62), Expect = 8.3
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = -1

Query: 622 RFVLSGYQNPLRQELPPXRGSRWGRAGSPSGGP 524
           RF     ++P R+  PP RG R+GR+ S S  P
Sbjct: 103 RFDRDRRRSPERRRSPPRRGRRYGRSRSRSMSP 135


>AE014297-55|AAF52146.1| 1260|Drosophila melanogaster CG9776-PA,
           isoform A protein.
          Length = 1260

 Score = 29.1 bits (62), Expect = 8.3
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = -1

Query: 622 RFVLSGYQNPLRQELPPXRGSRWGRAGSPSGGP 524
           RF     ++P R+  PP RG R+GR+ S S  P
Sbjct: 103 RFDRDRRRSPERRRSPPRRGRRYGRSRSRSMSP 135


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,037,722
Number of Sequences: 53049
Number of extensions: 409246
Number of successful extensions: 1272
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1272
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 4209111660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)