Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_C08
         (871 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z35604-2|CAA84677.1|  809|Caenorhabditis elegans Hypothetical pr...    28   7.5  
U19744-1|AAA85704.1|  809|Caenorhabditis elegans integrin beta p...    28   7.5  
AF040642-10|AAB94949.2|  576|Caenorhabditis elegans Hypothetical...    28   7.5  

>Z35604-2|CAA84677.1|  809|Caenorhabditis elegans Hypothetical
           protein ZK1058.2 protein.
          Length = 809

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -2

Query: 117 QPGCGNVINNENCVQYNDSSTCEFLSLNNC 28
           +PG      NE C + N+S+ CE   + NC
Sbjct: 514 RPGMSTAALNEKCKRTNESAICEGRGVCNC 543


>U19744-1|AAA85704.1|  809|Caenorhabditis elegans integrin beta
           pat-3 protein.
          Length = 809

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -2

Query: 117 QPGCGNVINNENCVQYNDSSTCEFLSLNNC 28
           +PG      NE C + N+S+ CE   + NC
Sbjct: 514 RPGMSTAALNEKCKRTNESAICEGRGVCNC 543


>AF040642-10|AAB94949.2|  576|Caenorhabditis elegans Hypothetical
           protein C50D2.1 protein.
          Length = 576

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 14/27 (51%), Positives = 14/27 (51%)
 Frame = +3

Query: 519 HAGPPDGLPARPQRDPLXGGNSWRSGF 599
           H GP  GL  R   D L GG SW  GF
Sbjct: 486 HVGPFMGLADRVGVDWLNGGVSWNKGF 512


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,427,347
Number of Sequences: 27780
Number of extensions: 187234
Number of successful extensions: 486
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 463
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 486
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2181923744
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)