Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_C08
         (871 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g80420.2 68414.m09416 DNA repair protein, putative (XRCC1) id...    31   1.0  
At1g80420.1 68414.m09415 DNA repair protein, putative (XRCC1) id...    31   1.0  

>At1g80420.2 68414.m09416 DNA repair protein, putative (XRCC1)
           identical to putative DNA repair protein XRCC1
           [Arabidopsis thaliana] GI:11181954; contains Pfam
           domain, PF00533: BRCA1 C Terminus (BRCT) domain
          Length = 353

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 18/42 (42%), Positives = 20/42 (47%)
 Frame = -1

Query: 619 FVLSGYQNPLRQELPPXRGSRWGRAGSPSGGPACTHLICAFP 494
           FVLSG+ NP R  L   +    G    P      T LICAFP
Sbjct: 68  FVLSGFVNPERSTL-RSQALTMGATYQPDWNAGSTLLICAFP 108


>At1g80420.1 68414.m09415 DNA repair protein, putative (XRCC1)
           identical to putative DNA repair protein XRCC1
           [Arabidopsis thaliana] GI:11181954; contains Pfam
           domain, PF00533: BRCA1 C Terminus (BRCT) domain
          Length = 353

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 18/42 (42%), Positives = 20/42 (47%)
 Frame = -1

Query: 619 FVLSGYQNPLRQELPPXRGSRWGRAGSPSGGPACTHLICAFP 494
           FVLSG+ NP R  L   +    G    P      T LICAFP
Sbjct: 68  FVLSGFVNPERSTL-RSQALTMGATYQPDWNAGSTLLICAFP 108


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,752,351
Number of Sequences: 28952
Number of extensions: 166913
Number of successful extensions: 432
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 414
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 430
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2038669600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)