Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_T7_C06
(806 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC22G7.01c ||SPAPJ696.03c|aminopeptidase |Schizosaccharomyces ... 65 1e-11
SPBC16D10.01c ||SPBC418.03c|conserved fungal protein|Schizosacch... 29 0.78
SPAP8A3.08 |cdc4||myosin II light chain|Schizosaccharomyces pomb... 29 0.78
SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10 |Schizos... 29 0.78
SPAC6G10.07 |||nuclear cap-binding complex large subunit |Schizo... 27 4.1
SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 5.5
SPCC1020.10 |oca2||serine/threonine protein kinase Oca2 |Schizos... 26 7.2
SPCC126.07c |||human CTD-binding SR-like protein rA9 homolog|Sch... 25 9.6
>SPAC22G7.01c ||SPAPJ696.03c|aminopeptidase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 598
Score = 65.3 bits (152), Expect = 1e-11
Identities = 34/96 (35%), Positives = 46/96 (47%)
Frame = -2
Query: 724 GNXTAEQRDAFTRVLKGQIMIGSALFPKGVKGNVLDSFARHALWEXXXXXXXXXXXXXXX 545
G + +R T LKG I + + +FPKG G ++D AR LW+
Sbjct: 416 GEPSEFERQTATLALKGHIALANIVFPKGTTGYMIDVLARQYLWKYGLDYLHGTGHGVGS 475
Query: 544 XLNVHEGPSGVSWRPYPDDPGLNVGQILSNEPGFYK 437
LNVHE P G+ R + L G + SNEPGFY+
Sbjct: 476 FLNVHELPVGIGSREVFNSAPLQAGMVTSNEPGFYE 511
Score = 50.8 bits (116), Expect = 2e-07
Identities = 27/74 (36%), Positives = 38/74 (51%)
Frame = -3
Query: 354 NLRGDYDGRGVLGFSTLTLVPNQRECIDAEILTDFEISYVNAYHRRVLDTLSPILKERGL 175
N + GR LG LTL P+ ++ ID +L+ E+ Y+N YH V TLSP+L
Sbjct: 529 NTENRFAGRTYLGLKDLTLAPHCQKLIDPSLLSPEEVKYLNEYHSEVYTTLSPMLS---- 584
Query: 174 LKDLEWLEGQCIPI 133
+ +WL PI
Sbjct: 585 VSAKKWLSKHTSPI 598
>SPBC16D10.01c ||SPBC418.03c|conserved fungal
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 336
Score = 29.1 bits (62), Expect = 0.78
Identities = 19/89 (21%), Positives = 43/89 (48%)
Frame = -3
Query: 405 LIEIVAVDKGSDHPKAKNLRGDYDGRGVLGFSTLTLVPNQRECIDAEILTDFEISYVNAY 226
++E + +DKG D K ++G Y L + L + P+ E + E+ T + ++A
Sbjct: 104 ILERLLIDKGEDADLKKKIQGAYCSIAELFMTDLCMQPDAEE--NCELYTKLALQ-IDAT 160
Query: 225 HRRVLDTLSPILKERGLLKDLEWLEGQCI 139
+ L TL+ + + +++ + +C+
Sbjct: 161 NAEALQTLASMRISQQKIEEAKDALSKCL 189
>SPAP8A3.08 |cdc4||myosin II light chain|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 141
Score = 29.1 bits (62), Expect = 0.78
Identities = 16/34 (47%), Positives = 18/34 (52%)
Frame = +3
Query: 369 DRFPYRQPQSLLDLRGEFRIPRTL*KPGSLLNIC 470
D PY+Q SL D G RIP+T G LL C
Sbjct: 4 DDSPYKQAFSLFDRHGTGRIPKT--SIGDLLRAC 35
>SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1649
Score = 29.1 bits (62), Expect = 0.78
Identities = 16/50 (32%), Positives = 25/50 (50%)
Frame = -3
Query: 303 TLVPNQRECIDAEILTDFEISYVNAYHRRVLDTLSPILKERGLLKDLEWL 154
TL+ Q +D +L E ++ ++L L+P E+ LK LEWL
Sbjct: 68 TLLGEQSVQVDRVLLNRTENEKIDLECVQILRLLAPFFTEKNALKVLEWL 117
>SPAC6G10.07 |||nuclear cap-binding complex large subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 780
Score = 26.6 bits (56), Expect = 4.1
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +2
Query: 389 ATISIRSSWRIPYSPNFVEARFVAQYLSNVQS 484
AT+ IR+S R+P A F QY +N+ S
Sbjct: 96 ATLIIRASLRVPLILEKAAAYFCLQYFTNLNS 127
>SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1038
Score = 26.2 bits (55), Expect = 5.5
Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Frame = +2
Query: 383 STATISIRSSWR-IPYSPNFVEARFVAQYLSNVQSRIVGVRTPRD 514
S AT S S R + Y PN F LSN+ S + ++P D
Sbjct: 275 SRATSSRSSKTRSVVYEPNHRHTSFFGDTLSNLSSSLNDKKSPND 319
>SPCC1020.10 |oca2||serine/threonine protein kinase Oca2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 650
Score = 25.8 bits (54), Expect = 7.2
Identities = 11/45 (24%), Positives = 22/45 (48%)
Frame = -1
Query: 791 SFXLRRAIXGWHDRHNSHAAHERQPYRGTERCVHSSAKRSDYDRQ 657
S L+ + HD+H+ H HE+ R S +++D +++
Sbjct: 234 SLSLKSLVPNHHDKHDKHDKHEKHHSSLDLRRFFKSHQKTDKEKK 278
>SPCC126.07c |||human CTD-binding SR-like protein rA9
homolog|Schizosaccharomyces pombe|chr 3|||Manual
Length = 571
Score = 25.4 bits (53), Expect = 9.6
Identities = 8/21 (38%), Positives = 11/21 (52%)
Frame = -1
Query: 509 VASVPRRSWTERWTDIEQRTW 447
V+ +R+WT W I R W
Sbjct: 204 VSQQQQRAWTRAWNAIRNRAW 224
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,142,399
Number of Sequences: 5004
Number of extensions: 62103
Number of successful extensions: 190
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 392429240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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