Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_C06
         (806 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_29090| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.002
SB_42186| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.002
SB_49565| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.4  
SB_54883| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.9  
SB_9380| Best HMM Match : DUF156 (HMM E-Value=1.5)                     28   7.7  
SB_4026| Best HMM Match : MSSP (HMM E-Value=1.3)                       28   7.7  
SB_8472| Best HMM Match : TatC (HMM E-Value=1.4)                       28   7.7  

>SB_29090| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 147

 Score = 33.9 bits (74), Expect(2) = 0.002
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = -2

Query: 538 NVHEGPSGVSWRPYPDDPGLNVGQILSNEPGFYK 437
           N   GP G++ R  PD+  L  G   S EPG+Y+
Sbjct: 78  NKTTGPQGINLRARPDEAPLEAGMTTSIEPGYYE 111



 Score = 25.4 bits (53), Expect(2) = 0.002
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -2

Query: 700 DAFTRVLKGQIMIGSALFPKGVKG 629
           + FTRV KG + +   +FP    G
Sbjct: 59  ECFTRVFKGHVSLAMTVFPNKTTG 82


>SB_42186| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 147

 Score = 33.9 bits (74), Expect(2) = 0.002
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = -2

Query: 538 NVHEGPSGVSWRPYPDDPGLNVGQILSNEPGFYK 437
           N   GP G++ R  PD+  L  G   S EPG+Y+
Sbjct: 78  NKTTGPQGINLRARPDEAPLEAGMTTSIEPGYYE 111



 Score = 25.4 bits (53), Expect(2) = 0.002
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -2

Query: 700 DAFTRVLKGQIMIGSALFPKGVKG 629
           + FTRV KG + +   +FP    G
Sbjct: 59  ECFTRVFKGHVSLAMTVFPNKTTG 82


>SB_49565| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1571

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 15/48 (31%), Positives = 24/48 (50%)
 Frame = +3

Query: 9    FFFTSSENHLFISQLFPIRIETKSCISVARVIQAS*GFTSWLSGCIDL 152
            +F + +   +   +LFPI I T   +S  R +    GF   L+GC+ L
Sbjct: 1430 WFASQTSQAIAYKELFPIIIATHVYLSGVRAMHIEQGFQDPLAGCLRL 1477


>SB_54883| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2070

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
 Frame = -1

Query: 794  CSFXLRRAIXGWHDRHNSHAAHERQPYRGTERCVHSSAKR--SDYDRQRFIPE 642
            C F  R+     + RH+S  + +R+P+   +R   S  KR  S   R+R +P+
Sbjct: 1236 CRFRDRKTNDQGNHRHHSRTSEKREPFEKRKRTTFSPHKRDWSRLLRERPVPD 1288


>SB_9380| Best HMM Match : DUF156 (HMM E-Value=1.5)
          Length = 589

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 29/133 (21%), Positives = 55/133 (41%), Gaps = 3/133 (2%)
 Frame = +1

Query: 97  E*SKLLEGSLPGYRDALTFEPLQILKQTALLQYRTQCVKHSSMVRVHV*NLEIGQNLCID 276
           E ++LLE ++     A + +  Q+  Q A   Y T C +H   + +     + G+ L + 
Sbjct: 394 EFTELLEDAIIENDIAQSVQRYQLAVQEAKHAYATTCARHLDRLPIVGVKRDEGRRLVVP 453

Query: 277 TFPLIGY*SQRAKAQNATTIVIASQI---LRLRMIASLIDSHNLY*IFVANSVFPELCRS 447
             P IG   +R  A N     +   +   L++      +   N Y +F     + EL  S
Sbjct: 454 R-PAIGGRFRRGHANNTVVNNVGRNLVSRLKITFAGETLQDTNRYDVF---KTYEELYLS 509

Query: 448 QVRCSISVQRSVQ 486
           +V     +++ +Q
Sbjct: 510 KVEREDRLEQGIQ 522


>SB_4026| Best HMM Match : MSSP (HMM E-Value=1.3)
          Length = 109

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 12/28 (42%), Positives = 13/28 (46%)
 Frame = +1

Query: 712 RXGCRSCAACELCRSCHPXIARRSXKEH 795
           R G R CA C +C  C P   RR    H
Sbjct: 36  RCGLRICAVCAVCPRCGPMDMRRMRGLH 63


>SB_8472| Best HMM Match : TatC (HMM E-Value=1.4)
          Length = 476

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 26/86 (30%), Positives = 39/86 (45%)
 Frame = +1

Query: 181 ALLQYRTQCVKHSSMVRVHV*NLEIGQNLCIDTFPLIGY*SQRAKAQNATTIVIASQILR 360
           A L+Y T+C    ++V V   N E+G +L I    L+ Y S     + AT  +   + L 
Sbjct: 54  ATLEYMTRCYPGETVVSVLCKNKELGSHLHIIVSTLMPYAS--GHDERATQALSLLRYLI 111

Query: 361 LRMIASLIDSHNLY*IFVANSVFPEL 438
           +    SL+D+  L   F     F EL
Sbjct: 112 VECTPSLLDAIPLLDPFPDLPQFKEL 137


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,254,419
Number of Sequences: 59808
Number of extensions: 489885
Number of successful extensions: 1305
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1305
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2239700683
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)