Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_C05
         (815 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    25   0.95 
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    25   0.95 
AY695256-1|AAW21973.1|  168|Tribolium castaneum ventral nerve co...    24   1.7  
AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment h...    23   3.8  
AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix...    21   8.9  

>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 24.6 bits (51), Expect = 0.95
 Identities = 21/72 (29%), Positives = 26/72 (36%), Gaps = 7/72 (9%)
 Frame = +2

Query: 443 PSHHTPEHCDRPALRG---GASVHLSSAAEYFNTLFRLTPPAQPPMMYRFSPPGSTXA-- 607
           P HH P H  +  + G   GA++H               PP Q        PPG+T A  
Sbjct: 176 PQHHQPHHQQQHMMYGGQQGANMHQQGPPHQ-------QPPIQQQPNQGQQPPGNTAAAL 228

Query: 608 --PAYDSARGSF 637
             P Y   R  F
Sbjct: 229 PSPLYPWMRSQF 240



 Score = 23.8 bits (49), Expect = 1.7
 Identities = 11/38 (28%), Positives = 16/38 (42%)
 Frame = +1

Query: 79  SPXGRVQALHAREELLAVEPSHRVHHASHHGQPHASAG 192
           SP    Q+++       ++  H  HH  HH Q H   G
Sbjct: 154 SPPLTTQSMNNHHMGHHMQEQHPQHHQPHHQQQHMMYG 191


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 24.6 bits (51), Expect = 0.95
 Identities = 21/72 (29%), Positives = 26/72 (36%), Gaps = 7/72 (9%)
 Frame = +2

Query: 443 PSHHTPEHCDRPALRG---GASVHLSSAAEYFNTLFRLTPPAQPPMMYRFSPPGSTXA-- 607
           P HH P H  +  + G   GA++H               PP Q        PPG+T A  
Sbjct: 178 PQHHQPHHQQQHMMYGGQQGANMHQQGPPHQ-------QPPIQQQPNQGQQPPGNTAAAL 230

Query: 608 --PAYDSARGSF 637
             P Y   R  F
Sbjct: 231 PSPLYPWMRSQF 242



 Score = 23.8 bits (49), Expect = 1.7
 Identities = 11/38 (28%), Positives = 16/38 (42%)
 Frame = +1

Query: 79  SPXGRVQALHAREELLAVEPSHRVHHASHHGQPHASAG 192
           SP    Q+++       ++  H  HH  HH Q H   G
Sbjct: 156 SPPLTTQSMNNHHMGHHMQEQHPQHHQPHHQQQHMMYG 193


>AY695256-1|AAW21973.1|  168|Tribolium castaneum ventral nerve cord
           defective protein protein.
          Length = 168

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 16/40 (40%), Positives = 23/40 (57%)
 Frame = +2

Query: 221 VPSRVSSQSVLRSEAAPSEPPAEMSLDPHTQPPTERRAVG 340
           +PS  S+ +V  SE  P E  +E S DPH    T+++A G
Sbjct: 3   LPSSASNPAV--SERDPDEDNSEDSKDPHL---TDQQASG 37


>AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment
           homeodomain protein protein.
          Length = 232

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 9/12 (75%), Positives = 9/12 (75%)
 Frame = +1

Query: 298 RPPHAAPNGAPG 333
           RPPH A  GAPG
Sbjct: 214 RPPHFAFPGAPG 225


>AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix
           transcription factor protein.
          Length = 249

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = +2

Query: 221 VPSRVSSQSVLRSEAAPSEPPAEMSLDP 304
           +P R +S +   S  +PS+ P   S+ P
Sbjct: 202 IPQRTASTASSASNYSPSQSPEPESVRP 229


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,535
Number of Sequences: 336
Number of extensions: 4321
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 22310335
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)