Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_C05
         (815 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29B12.14c |||purine transporter |Schizosaccharomyces pombe|c...    29   0.79 
SPAC1399.03 |fur4||uracil permease|Schizosaccharomyces pombe|chr...    27   3.2  
SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces p...    26   5.6  
SPBC651.07 |csa1||sequence orphan|Schizosaccharomyces pombe|chr ...    26   7.4  
SPBC2G2.14 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   7.4  

>SPAC29B12.14c |||purine transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 581

 Score = 29.1 bits (62), Expect = 0.79
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = -1

Query: 188 ALAWGWPWWEAWCTRWEG 135
           A+  G  WWEAW T W G
Sbjct: 79  AVESGLSWWEAWITVWVG 96


>SPAC1399.03 |fur4||uracil permease|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 581

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = -1

Query: 188 ALAWGWPWWEAWCTRWEG 135
           A+  G  WWEAW   W G
Sbjct: 81  AIELGLNWWEAWICVWVG 98


>SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 647

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = +1

Query: 304 PHAAPNGAPGCRQGGTGAPRLAPI 375
           P AAP  APG   GG   P +  +
Sbjct: 623 PGAAPGAAPGAAPGGDNGPEVEEV 646


>SPBC651.07 |csa1||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 268

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 4/46 (8%)
 Frame = +2

Query: 566 PMMYRFSPPGSTX-APAYDSARGSFAFACHEAVLQSP---DRVQFC 691
           P++   S P ST  AP   S R     AC++AVL      +R++ C
Sbjct: 36  PIVQTLSIPSSTSSAPLVTSVREILELACNDAVLDKSFLNERLEHC 81


>SPBC2G2.14 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 533

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +2

Query: 545 LTPPAQPPMMYRFSPPGS 598
           LTP + PP  +RF PP S
Sbjct: 120 LTPASAPPPRFRFVPPKS 137


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,169,845
Number of Sequences: 5004
Number of extensions: 64238
Number of successful extensions: 245
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 221
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 245
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 398435810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)