Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_T7_C01
(786 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P39023 Cluster: 60S ribosomal protein L3; n=228; Eukary... 208 1e-52
UniRef50_Q92901 Cluster: 60S ribosomal protein L3-like; n=44; Bi... 196 4e-49
UniRef50_Q6BEU5 Cluster: Putative uncharacterized protein rpl-3;... 150 3e-35
UniRef50_UPI000061854E Cluster: 60S ribosomal protein L3 (HIV-1 ... 132 1e-29
UniRef50_Q581Q2 Cluster: Ribosomal protein L3, putative; n=6; Tr... 131 2e-29
UniRef50_UPI0000503B42 Cluster: UPI0000503B42 related cluster; n... 122 8e-27
UniRef50_Q99N25 Cluster: Ribosomal protein L3; n=2; Theria|Rep: ... 113 4e-24
UniRef50_UPI0000D9B08A Cluster: PREDICTED: similar to 60S riboso... 84 4e-15
UniRef50_Q3LWC1 Cluster: Ribosomal protein L3; n=1; Bigelowiella... 80 7e-14
UniRef50_Q8TZZ8 Cluster: 50S ribosomal protein L3P; n=4; Thermoc... 67 5e-10
UniRef50_Q673S9 Cluster: Ribosomal protein L3; n=1; uncultured m... 60 5e-08
UniRef50_P60458 Cluster: 50S ribosomal protein L3P; n=1; Nanoarc... 58 2e-07
UniRef50_P54014 Cluster: 50S ribosomal protein L3P; n=6; Euryarc... 58 2e-07
UniRef50_Q0W1Y9 Cluster: 50S ribosomal protein L3P; n=4; Euryarc... 57 4e-07
UniRef50_Q2QAT1 Cluster: Ribosomal protein L3; n=1; uncultured m... 56 8e-07
UniRef50_Q9HPD4 Cluster: 50S ribosomal protein L3P; n=4; Euryarc... 51 3e-05
UniRef50_Q8TY90 Cluster: 50S ribosomal protein L3P; n=13; Euryar... 50 5e-05
UniRef50_Q97BX7 Cluster: 50S ribosomal protein L3P; n=4; Thermop... 49 1e-04
UniRef50_A1RWR0 Cluster: 50S ribosomal protein L3; n=1; Thermofi... 47 5e-04
UniRef50_A0RVX4 Cluster: 50S ribosomal protein L3; n=1; Cenarcha... 45 0.002
UniRef50_Q9UXA8 Cluster: 50S ribosomal protein L3P; n=5; Thermop... 45 0.002
UniRef50_A7DSZ4 Cluster: Ribosomal protein L3; n=1; Candidatus N... 44 0.003
UniRef50_A3DNA4 Cluster: 50S ribosomal protein L3; n=1; Staphylo... 44 0.006
UniRef50_Q9YFM2 Cluster: 50S ribosomal protein L3P; n=6; Thermop... 42 0.018
UniRef50_UPI00015BB2A1 Cluster: LSU ribosomal protein L3P; n=1; ... 39 0.16
UniRef50_Q4PDK1 Cluster: Putative uncharacterized protein; n=1; ... 36 0.87
UniRef50_Q0W544 Cluster: Phosphoenolpyruvate synthetase; n=3; ce... 36 0.87
UniRef50_Q7Z5Z5 Cluster: NPC-A-12; n=1; Homo sapiens|Rep: NPC-A-... 36 1.5
UniRef50_UPI000051A196 Cluster: PREDICTED: similar to Toll-6 CG7... 35 2.0
UniRef50_Q4MR22 Cluster: Putative uncharacterized protein; n=1; ... 34 3.5
UniRef50_A0Y0D7 Cluster: Methyl-accepting chemotaxis protein; n=... 34 3.5
UniRef50_Q8TB36 Cluster: Ganglioside-induced differentiation-ass... 34 3.5
UniRef50_A6BE46 Cluster: Putative uncharacterized protein; n=2; ... 34 4.6
UniRef50_Q192G3 Cluster: Pyruvate phosphate dikinase, PEP/pyruva... 33 6.1
UniRef50_Q17U53 Cluster: DNA-directed RNA polymerase, putative; ... 33 6.1
UniRef50_Q6KI55 Cluster: 50S ribosomal protein L3; n=11; Bacteri... 33 8.1
>UniRef50_P39023 Cluster: 60S ribosomal protein L3; n=228;
Eukaryota|Rep: 60S ribosomal protein L3 - Homo sapiens
(Human)
Length = 403
Score = 208 bits (508), Expect = 1e-52
Identities = 114/227 (50%), Positives = 144/227 (63%)
Frame = -1
Query: 777 KKXXXIMGIQXNXGXXGGQSEXGQRHXEKPIPVDSVFAQDEMVDCIGVTQGQRIQRCHFS 598
+K +M IQ N G + + + E+ +PV+ VF QDEM+D IGVT+G+ + S
Sbjct: 175 QKKAHLMEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIGVTKGKGYKGVT-S 233
Query: 597 LAHKEATP*DTPRVLGKLPALELGILLGCRSL*LVLVRKVIITVLK*TRKSIVLDQGIHK 418
H + P T R L K+ + +K + +K + QG
Sbjct: 234 RWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKIGQGYLI 293
Query: 417 KDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRV 238
KDGK+IKNNAST+YDLS+KSI P+GGF HYGEV NDFVM+KGC +G KKR++TLRKSL V
Sbjct: 294 KDGKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGTKKRVLTLRKSLLV 353
Query: 237 HTKRAALEKINLKFIDTSSKFGHGRFQTPAXKAAFMGTLKKDRIREE 97
TKR ALEKI+LKFIDT+SKFGHGRFQT K AFMG LKKDRI +E
Sbjct: 354 QTKRRALEKIDLKFIDTTSKFGHGRFQTMEEKKAFMGPLKKDRIAKE 400
Score = 91.5 bits (217), Expect = 2e-17
Identities = 38/51 (74%), Positives = 46/51 (90%)
Frame = -3
Query: 586 RSYPVRHTKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIG 434
+ P + +GLRKVACIGAWHP+RV+F+VARAGQKGYHHRTE+NKKIY+IG
Sbjct: 238 KKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKIG 288
Score = 59.7 bits (138), Expect = 8e-08
Identities = 30/68 (44%), Positives = 38/68 (55%)
Frame = -2
Query: 761 LWESXLTGGXXGXKVXXARDXWRNLSLSILCLPKMKWLTALVSPKGKGYKGVTSRWHTKK 582
L E + GG K+ AR+ + + + + KGKGYKGVTSRWHTKK
Sbjct: 180 LMEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIGVTKGKGYKGVTSRWHTKK 239
Query: 581 LPRKTHQG 558
LPRKTH+G
Sbjct: 240 LPRKTHRG 247
>UniRef50_Q92901 Cluster: 60S ribosomal protein L3-like; n=44;
Bilateria|Rep: 60S ribosomal protein L3-like - Homo
sapiens (Human)
Length = 407
Score = 196 bits (479), Expect = 4e-49
Identities = 109/228 (47%), Positives = 140/228 (61%), Gaps = 2/228 (0%)
Frame = -1
Query: 777 KKXXXIMGIQXNXGXXGGQSEXGQRHXEKPIPVDSVFAQDEMVDCIGVTQGQRIQRCHFS 598
+K IM IQ N G + Q EK +PV SVF+Q E++D I VT+G+ ++ S
Sbjct: 175 QKKAHIMEIQLNGGTVAEKVAWAQARLEKQVPVHSVFSQSEVIDVIAVTKGRGVKGVT-S 233
Query: 597 LAHKEATP*DTPRVLGKLPALELG--ILLGCRSL*LVLVRKVIITVLK*TRKSIVLDQGI 424
H + P T + L K+ + +GC +K + +K + +G
Sbjct: 234 RWHTKKLPRKTHKGLRKVACIGAWHPARVGCSIA--RAGQKGYHHRTELNKKIFRIGRGP 291
Query: 423 HKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSL 244
H +DGK++KNNAST YD++ KSITP+GGFPHYGEVNNDFVM+KGC G KKR+ITLRKSL
Sbjct: 292 HMEDGKLVKNNASTSYDVTAKSITPLGGFPHYGEVNNDFVMLKGCIAGTKKRVITLRKSL 351
Query: 243 RVHTKRAALEKINLKFIDTSSKFGHGRFQTPAXKAAFMGTLKKDRIRE 100
VH R A+E I LKFIDT+SKFGHGRFQT K AFMG KK +E
Sbjct: 352 LVHHSRQAVENIELKFIDTTSKFGHGRFQTAQEKRAFMGPQKKHLEKE 399
Score = 89.0 bits (211), Expect = 1e-16
Identities = 39/55 (70%), Positives = 46/55 (83%)
Frame = -3
Query: 586 RSYPVRHTKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGPRNP 422
+ P + KGLRKVACIGAWHP+RV ++ARAGQKGYHHRTE+NKKI+RIG R P
Sbjct: 238 KKLPRKTHKGLRKVACIGAWHPARVGCSIARAGQKGYHHRTELNKKIFRIG-RGP 291
Score = 55.2 bits (127), Expect = 2e-06
Identities = 28/68 (41%), Positives = 36/68 (52%)
Frame = -2
Query: 761 LWESXLTGGXXGXKVXXARDXWRNLSLSILCLPKMKWLTALVSPKGKGYKGVTSRWHTKK 582
+ E L GG KV A+ + + + + KG+G KGVTSRWHTKK
Sbjct: 180 IMEIQLNGGTVAEKVAWAQARLEKQVPVHSVFSQSEVIDVIAVTKGRGVKGVTSRWHTKK 239
Query: 581 LPRKTHQG 558
LPRKTH+G
Sbjct: 240 LPRKTHKG 247
>UniRef50_Q6BEU5 Cluster: Putative uncharacterized protein rpl-3;
n=1; Caenorhabditis elegans|Rep: Putative
uncharacterized protein rpl-3 - Caenorhabditis elegans
Length = 353
Score = 150 bits (364), Expect = 3e-35
Identities = 69/100 (69%), Positives = 82/100 (82%)
Frame = -1
Query: 399 KNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAA 220
KNN STE+DL++K+ITPMGGFP YG VN D++M++G +GPKKR+ITLRKSL TKR A
Sbjct: 249 KNNGSTEFDLTQKTITPMGGFPRYGIVNQDYIMLRGAVLGPKKRLITLRKSLITQTKRVA 308
Query: 219 LEKINLKFIDTSSKFGHGRFQTPAXKAAFMGTLKKDRIRE 100
EKINLK+IDTSSK GHGRFQT A K AFMG LK+D + E
Sbjct: 309 HEKINLKWIDTSSKTGHGRFQTTAEKRAFMGKLKRDFLAE 348
Score = 89.8 bits (213), Expect = 7e-17
Identities = 39/51 (76%), Positives = 44/51 (86%)
Frame = -3
Query: 586 RSYPVRHTKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIG 434
+ P + KGLRKVACIGAWHPSRV+FTVARAGQKG+HHRT +N KIYRIG
Sbjct: 190 KKLPRKTHKGLRKVACIGAWHPSRVAFTVARAGQKGFHHRTIINNKIYRIG 240
Score = 52.8 bits (121), Expect = 9e-06
Identities = 22/41 (53%), Positives = 29/41 (70%)
Frame = -2
Query: 680 SILCLPKMKWLTALVSPKGKGYKGVTSRWHTKKLPRKTHQG 558
SI + + + + +G G+KGVTSRWHTKKLPRKTH+G
Sbjct: 159 SIRVIAHTQMIDTIGVTRGHGFKGVTSRWHTKKLPRKTHKG 199
>UniRef50_UPI000061854E Cluster: 60S ribosomal protein L3 (HIV-1 TAR
RNA-binding protein B) (TARBP-B).; n=1; Bos taurus|Rep:
60S ribosomal protein L3 (HIV-1 TAR RNA-binding protein
B) (TARBP-B). - Bos Taurus
Length = 340
Score = 132 bits (318), Expect = 1e-29
Identities = 64/114 (56%), Positives = 82/114 (71%)
Frame = -1
Query: 453 RKSIVLDQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPK 274
+K + QG K+GK+IKNNAST+Y KSI+P+GG H G+V NDFVM+K C +G K
Sbjct: 230 KKIYKIGQGYLIKNGKIIKNNASTDYT---KSISPLGGCIHCGKVTNDFVMLKDCLVGTK 286
Query: 273 KRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPAXKAAFMGTLKKD 112
KR+++L KSL + TK+ L+K+N KFIDT+SKFGHG FQ K FMG LKKD
Sbjct: 287 KRVLSLCKSLLMRTKQQTLQKVNFKFIDTTSKFGHGCFQIVGEKKGFMGPLKKD 340
Score = 46.0 bits (104), Expect = 0.001
Identities = 19/43 (44%), Positives = 29/43 (67%)
Frame = -2
Query: 662 KMKWLTALVSPKGKGYKGVTSRWHTKKLPRKTHQGS*ESCLHW 534
+++ L + + KGK YKG++S W+TKK+P KTHQ E+ W
Sbjct: 168 RVRRLFVIGTTKGKHYKGISSHWYTKKVPWKTHQEFHEAACIW 210
>UniRef50_Q581Q2 Cluster: Ribosomal protein L3, putative; n=6;
Trypanosomatidae|Rep: Ribosomal protein L3, putative -
Trypanosoma brucei
Length = 480
Score = 131 bits (317), Expect = 2e-29
Identities = 61/100 (61%), Positives = 73/100 (73%)
Frame = -1
Query: 396 NNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAAL 217
N A+T YDL+ K+ITPMGGF YG V ND+VM+KG GP++R+ITLR+ + T R
Sbjct: 350 NQATTAYDLTAKTITPMGGFVGYGTVRNDYVMLKGSVAGPRRRVITLRRPMAPQTSRKLT 409
Query: 216 EKINLKFIDTSSKFGHGRFQTPAXKAAFMGTLKKDRIREE 97
EKI LKFIDTSSK GHGRFQT K+ + G LKKDRIR E
Sbjct: 410 EKITLKFIDTSSKIGHGRFQTKKEKSQWYGPLKKDRIRRE 449
Score = 86.6 bits (205), Expect = 6e-16
Identities = 36/48 (75%), Positives = 42/48 (87%)
Frame = -3
Query: 577 PVRHTKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIG 434
P + +GLRKVACIGAWHPSRV +TVARAGQ GYHHRT +NKKIY++G
Sbjct: 295 PRKTHRGLRKVACIGAWHPSRVMYTVARAGQHGYHHRTHLNKKIYQLG 342
Score = 36.3 bits (80), Expect = 0.87
Identities = 19/52 (36%), Positives = 25/52 (48%)
Frame = -1
Query: 780 GKKXXXIMGIQXNXGXXGGQSEXGQRHXEKPIPVDSVFAQDEMVDCIGVTQG 625
G K + IQ N G + E + EK + +DSVF Q E D VT+G
Sbjct: 228 GVKKAHVSEIQINGGTIAQKIELAKSLLEKEVRIDSVFQQSEACDVCAVTKG 279
Score = 35.9 bits (79), Expect = 1.2
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = -2
Query: 629 KGKGYKGVTSRWHTKKLPRKTHQG 558
KG G+ GV RW LPRKTH+G
Sbjct: 278 KGHGFTGVVKRWGVACLPRKTHRG 301
>UniRef50_UPI0000503B42 Cluster: UPI0000503B42 related cluster; n=2;
Rattus norvegicus|Rep: UPI0000503B42 UniRef100 entry -
Rattus norvegicus
Length = 380
Score = 122 bits (295), Expect = 8e-27
Identities = 64/119 (53%), Positives = 80/119 (67%)
Frame = -1
Query: 453 RKSIVLDQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPK 274
+K + QG KDGK+IKNNA TEY LS+KSI +GGF HYGEV NDF+ +KGC + K
Sbjct: 260 KKICKIGQGYLIKDGKLIKNNAPTEYHLSDKSINLLGGFVHYGEVTNDFIRLKGCAVRTK 319
Query: 273 KRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPAXKAAFMGTLKKDRIREE 97
K +T+ K L V T + AL+KI+ K DT+ K GHG FQT K AF+G LKK+ EE
Sbjct: 320 KH-LTICKYLLVQTIQWALKKIDPKLNDTTYKVGHGCFQTTEGKRAFIGPLKKECTAEE 377
Score = 66.9 bits (156), Expect = 5e-10
Identities = 31/55 (56%), Positives = 41/55 (74%)
Frame = -3
Query: 598 VGTQRSYPVRHTKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIG 434
V QR+ P R +G K+ C+GAWHP+RV+F+VA+ GQKGYHH + NKKI +IG
Sbjct: 214 VDIQRNCPERPIEGCPKL-CVGAWHPARVTFSVAQVGQKGYHHNGD-NKKICKIG 266
>UniRef50_Q99N25 Cluster: Ribosomal protein L3; n=2; Theria|Rep:
Ribosomal protein L3 - Mus musculus (Mouse)
Length = 67
Score = 113 bits (273), Expect = 4e-24
Identities = 50/67 (74%), Positives = 59/67 (88%)
Frame = -1
Query: 411 GKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHT 232
GK+IKNNAST+YDLS+KSI P+GGF HYGEV NDF+M+KGC +G KKR++TLRKSL V T
Sbjct: 1 GKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFIMLKGCVVGTKKRVLTLRKSLLVQT 60
Query: 231 KRAALEK 211
KR ALEK
Sbjct: 61 KRRALEK 67
>UniRef50_UPI0000D9B08A Cluster: PREDICTED: similar to 60S ribosomal
protein L3 (L4); n=1; Macaca mulatta|Rep: PREDICTED:
similar to 60S ribosomal protein L3 (L4) - Macaca
mulatta
Length = 153
Score = 83.8 bits (198), Expect = 4e-15
Identities = 41/63 (65%), Positives = 49/63 (77%)
Frame = -1
Query: 285 MGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPAXKAAFMGTLKKDRI 106
+G KK+++TL KS V TK ALEKI+LKFIDT+SKFGHGRFQT K AFMG LKKD+
Sbjct: 88 VGTKKQVLTLCKSSLVQTKWRALEKIDLKFIDTTSKFGHGRFQTIGEKKAFMGPLKKDQT 147
Query: 105 REE 97
+E
Sbjct: 148 AKE 150
>UniRef50_Q3LWC1 Cluster: Ribosomal protein L3; n=1; Bigelowiella
natans|Rep: Ribosomal protein L3 - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 370
Score = 79.8 bits (188), Expect = 7e-14
Identities = 60/189 (31%), Positives = 96/189 (50%), Gaps = 1/189 (0%)
Frame = -1
Query: 693 KPIPVDSVFAQDEMVDCIGVTQGQRIQRCHFSLAHKEATP*DTPRVLGKLPALELGILLG 514
K I ++S+F +++++D IG+T+G + S P T R L K+ + G
Sbjct: 185 KKIYINSIFHENDIIDAIGITKGHGTKGV-VSRWGITRLPRKTHRGLRKVACI--GPWTP 241
Query: 513 CRSL*LVLVRKVIITVLK*TRKSIVLDQGIHKKDGKVIKNNASTEY-DLSEKSITPMGGF 337
R + + K K + ++ I+K + + S D KS+ MGGF
Sbjct: 242 SR-----VAWTISRAGQKGYHKRTLFNKKIYKIGSEENFSYYSNSLSDSIVKSVNCMGGF 296
Query: 336 PHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQ 157
+G +NND+++IKG G KR I LRK+++ EKI LK++DTSSK GHGR++
Sbjct: 297 KKFGFINNDYLIIKGSMTGSSKRPILLRKNIKNKISSVITEKIILKYVDTSSKRGHGRYE 356
Query: 156 TPAXKAAFM 130
+ A K + M
Sbjct: 357 SSADKFSKM 365
Score = 77.0 bits (181), Expect = 5e-13
Identities = 33/48 (68%), Positives = 40/48 (83%)
Frame = -3
Query: 577 PVRHTKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIG 434
P + +GLRKVACIG W PSRV++T++RAGQKGYH RT NKKIY+IG
Sbjct: 223 PRKTHRGLRKVACIGPWTPSRVAWTISRAGQKGYHKRTLFNKKIYKIG 270
Score = 39.9 bits (89), Expect = 0.071
Identities = 17/31 (54%), Positives = 21/31 (67%)
Frame = -2
Query: 650 LTALVSPKGKGYKGVTSRWHTKKLPRKTHQG 558
+ A+ KG G KGV SRW +LPRKTH+G
Sbjct: 199 IDAIGITKGHGTKGVVSRWGITRLPRKTHRG 229
>UniRef50_Q8TZZ8 Cluster: 50S ribosomal protein L3P; n=4;
Thermococcaceae|Rep: 50S ribosomal protein L3P -
Pyrococcus furiosus
Length = 365
Score = 66.9 bits (156), Expect = 5e-10
Identities = 28/52 (53%), Positives = 36/52 (69%)
Frame = -3
Query: 571 RHTKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGPRNPQK 416
+ +KG RKV IG WHP+RV +TV AGQ G+HHRTE+NK++ IG K
Sbjct: 245 KDSKGRRKVGSIGPWHPARVMWTVPMAGQMGFHHRTELNKRLIAIGENGKLK 296
Score = 60.1 bits (139), Expect = 6e-08
Identities = 27/64 (42%), Positives = 40/64 (62%)
Frame = -1
Query: 369 SEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFID 190
+E ITP GGFPHYG V +DF+MI G G KRII +R ++R K+ +++ + ++
Sbjct: 301 TEIEITPKGGFPHYGIVRSDFMMIAGSVPGAIKRIIRVRPAIRPPKKKPPVQRPQITYVS 360
Query: 189 TSSK 178
SK
Sbjct: 361 VESK 364
>UniRef50_Q673S9 Cluster: Ribosomal protein L3; n=1; uncultured
marine group II euryarchaeote DeepAnt-JyKC7|Rep:
Ribosomal protein L3 - uncultured marine group II
euryarchaeote DeepAnt-JyKC7
Length = 358
Score = 60.5 bits (140), Expect = 5e-08
Identities = 27/65 (41%), Positives = 41/65 (63%)
Frame = -1
Query: 366 EKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDT 187
E +TP GGF HYGEV N +++++G GP KR++ R +R HT + ++L ++ T
Sbjct: 296 ESDVTPAGGFLHYGEVTNPYMVLEGSLPGPAKRLLRFRDPVRPHTN---VFDVDLTYVST 352
Query: 186 SSKFG 172
SSK G
Sbjct: 353 SSKQG 357
Score = 42.7 bits (96), Expect = 0.010
Identities = 19/45 (42%), Positives = 30/45 (66%)
Frame = -3
Query: 571 RHTKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRI 437
+++K R++ +G + V T+ +AGQ GYH RTE+NK+I RI
Sbjct: 247 KNSKRRRQIGNMGDFGTGYVRKTIRQAGQMGYHKRTELNKRILRI 291
>UniRef50_P60458 Cluster: 50S ribosomal protein L3P; n=1;
Nanoarchaeum equitans|Rep: 50S ribosomal protein L3P -
Nanoarchaeum equitans
Length = 321
Score = 58.4 bits (135), Expect = 2e-07
Identities = 29/55 (52%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Frame = -3
Query: 562 KGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIG-PRNPQKGWQSY 401
KG+RKV IG+ P R+ TV GQ GYH RTE NK I +IG P N + GW Y
Sbjct: 218 KGVRKVGAIGSRGPGRIFPTVPMPGQMGYHRRTEYNKLIIKIGEPLNVEGGWVRY 272
Score = 42.3 bits (95), Expect = 0.013
Identities = 20/56 (35%), Positives = 35/56 (62%)
Frame = -1
Query: 345 GGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSK 178
GG+ YG+V +++KG GP+KR+I LR+++R K+ +E +++I S K
Sbjct: 267 GGWVRYGQVIGPTILLKGSVPGPRKRLIILREAIRPPRKQEKVE--GIEYISLSPK 320
>UniRef50_P54014 Cluster: 50S ribosomal protein L3P; n=6;
Euryarchaeota|Rep: 50S ribosomal protein L3P -
Methanococcus jannaschii
Length = 335
Score = 58.0 bits (134), Expect = 2e-07
Identities = 26/62 (41%), Positives = 41/62 (66%)
Frame = -1
Query: 357 ITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSK 178
ITP GGF HYG + N++V++KG GP KR+I LR+++R + ++ + +I T+SK
Sbjct: 275 ITPKGGFLHYGVIRNNYVVLKGSVQGPAKRLIVLRRAIR--PQEPLIKVPEITYISTTSK 332
Query: 177 FG 172
G
Sbjct: 333 QG 334
Score = 49.6 bits (113), Expect = 9e-05
Identities = 23/44 (52%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Frame = -3
Query: 562 KGL-RKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIG 434
KG+ R V IG W P V ++V GQ GYH RTE NK+I +IG
Sbjct: 226 KGVGRHVGSIGPWQPKMVMWSVPMPGQMGYHQRTEYNKRILKIG 269
>UniRef50_Q0W1Y9 Cluster: 50S ribosomal protein L3P; n=4;
Euryarchaeota|Rep: 50S ribosomal protein L3P -
Uncultured methanogenic archaeon RC-I
Length = 337
Score = 57.2 bits (132), Expect = 4e-07
Identities = 25/64 (39%), Positives = 39/64 (60%)
Frame = -1
Query: 363 KSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTS 184
+ ITP GGF HYG + ND++M+KG GP KR++ +R ++R K + + ++ T
Sbjct: 276 EEITPAGGFLHYGLIRNDYIMLKGSIPGPVKRMVRIRPAVR--PKNMPKQAPEITYLSTQ 333
Query: 183 SKFG 172
SK G
Sbjct: 334 SKMG 337
Score = 50.0 bits (114), Expect = 7e-05
Identities = 23/57 (40%), Positives = 34/57 (59%)
Frame = -3
Query: 598 VGTQRSYPVRHTKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGPR 428
+ TQ+ R K R V +G W+P R+ + V + GQ GYH RTE NK+I ++G +
Sbjct: 219 IATQKRKHARTGKK-RHVGNLGPWNPHRIRWQVPQLGQTGYHQRTEYNKRILKMGDK 274
>UniRef50_Q2QAT1 Cluster: Ribosomal protein L3; n=1; uncultured
marine group II euryarchaeote HF70_59C08|Rep: Ribosomal
protein L3 - uncultured marine group II euryarchaeote
HF70_59C08
Length = 338
Score = 56.4 bits (130), Expect = 8e-07
Identities = 27/65 (41%), Positives = 39/65 (60%)
Frame = -1
Query: 366 EKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDT 187
E ITP GGF HYGEV N +++I+G GP KR+I R + R R +++ ++ T
Sbjct: 276 ESQITPAGGFLHYGEVKNHYMIIQGSLPGPAKRLIRFRDAAR---PRREQPPVDITYVST 332
Query: 186 SSKFG 172
+SK G
Sbjct: 333 ASKQG 337
Score = 41.9 bits (94), Expect = 0.018
Identities = 19/45 (42%), Positives = 29/45 (64%)
Frame = -3
Query: 571 RHTKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRI 437
+++K R++ +G + V T+ +AGQ GYH RTE NK+I RI
Sbjct: 227 KNSKRRRQIGNMGDFGTGYVRKTIRQAGQTGYHQRTEYNKRILRI 271
>UniRef50_Q9HPD4 Cluster: 50S ribosomal protein L3P; n=4;
Euryarchaeota|Rep: 50S ribosomal protein L3P -
Halobacterium salinarium (Halobacterium halobium)
Length = 335
Score = 51.2 bits (117), Expect = 3e-05
Identities = 23/54 (42%), Positives = 34/54 (62%), Gaps = 3/54 (5%)
Frame = -3
Query: 553 RKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGPRN---PQKGWQSY 401
R++ +G W+PSRV TV + GQ GYH RTE+NK++ I + P G+ +Y
Sbjct: 232 RRIGNLGPWNPSRVRSTVPQQGQTGYHQRTELNKRLIDINDGDEPTPDGGFPNY 285
Score = 48.0 bits (109), Expect = 3e-04
Identities = 21/61 (34%), Positives = 40/61 (65%)
Frame = -1
Query: 354 TPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKF 175
TP GGFP+YGEV+ + ++KG GP++R++ R ++R + + L+ ++++ T+S
Sbjct: 277 TPDGGFPNYGEVDGPYTLVKGSVPGPEQRLVRFRPAVRPN-ESPRLDP-EVRYVSTASNQ 334
Query: 174 G 172
G
Sbjct: 335 G 335
>UniRef50_Q8TY90 Cluster: 50S ribosomal protein L3P; n=13;
Euryarchaeota|Rep: 50S ribosomal protein L3P -
Methanopyrus kandleri
Length = 361
Score = 50.4 bits (115), Expect = 5e-05
Identities = 26/46 (56%), Positives = 30/46 (65%)
Frame = -3
Query: 571 RHTKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIG 434
R KG R + IG PSRV +TV AGQ GYH RTE NK+I +IG
Sbjct: 231 RKQKG-RHIGSIGPITPSRVRWTVPMAGQVGYHQRTEHNKRILKIG 275
Score = 50.0 bits (114), Expect = 7e-05
Identities = 20/41 (48%), Positives = 29/41 (70%)
Frame = -1
Query: 363 KSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLR 241
+ +TP GGF +YG V D++MI G GPKKR+I +R ++R
Sbjct: 279 EEVTPRGGFVNYGVVRGDYIMIHGTVPGPKKRLIRVRPAVR 319
>UniRef50_Q97BX7 Cluster: 50S ribosomal protein L3P; n=4;
Thermoplasmatales|Rep: 50S ribosomal protein L3P -
Thermoplasma volcanium
Length = 331
Score = 49.2 bits (112), Expect = 1e-04
Identities = 29/81 (35%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Frame = -1
Query: 408 KVIKNNASTEYDLSEKS--ITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVH 235
+ I N +Y E + I GGF HYG V ND+V++ G GP KR+I +R R
Sbjct: 252 RTISNVRVLKYSKGEDADTINVRGGFLHYGLVKNDYVLLFGSVPGPAKRLIKMRDPAR-- 309
Query: 234 TKRAALEKINLKFIDTSSKFG 172
K ++ + L +I SK G
Sbjct: 310 QKVPDIDNVKLDYISLESKQG 330
Score = 42.3 bits (95), Expect = 0.013
Identities = 18/46 (39%), Positives = 26/46 (56%)
Frame = -3
Query: 577 PVRHTKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYR 440
P ++ K R + +G WHP V TV +AGQ GY RT N ++ +
Sbjct: 216 PRKNRKHRRMIGTLGPWHPDWVRNTVPQAGQMGYQQRTISNVRVLK 261
>UniRef50_A1RWR0 Cluster: 50S ribosomal protein L3; n=1; Thermofilum
pendens Hrk 5|Rep: 50S ribosomal protein L3 -
Thermofilum pendens (strain Hrk 5)
Length = 334
Score = 47.2 bits (107), Expect = 5e-04
Identities = 19/43 (44%), Positives = 29/43 (67%)
Frame = -1
Query: 369 SEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLR 241
S K I P GG+PHYG V + F++++G G KR++ LR ++R
Sbjct: 270 SLKEINPPGGWPHYGLVRSQFIIVEGSVPGAVKRLVRLRHAIR 312
Score = 44.0 bits (99), Expect = 0.004
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 6/63 (9%)
Frame = -3
Query: 571 RHTKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGPR------NPQKGW 410
+H KG ++ +G P+ + F GQ G+H RTE NK+I ++G NP GW
Sbjct: 222 KHRKGHSRIGSVGPQKPA-IMFYTPFPGQLGFHQRTEYNKRILKVGDAESLKEINPPGGW 280
Query: 409 QSY 401
Y
Sbjct: 281 PHY 283
>UniRef50_A0RVX4 Cluster: 50S ribosomal protein L3; n=1; Cenarchaeum
symbiosum|Rep: 50S ribosomal protein L3 - Cenarchaeum
symbiosum
Length = 328
Score = 45.2 bits (102), Expect = 0.002
Identities = 19/43 (44%), Positives = 27/43 (62%)
Frame = -3
Query: 562 KGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIG 434
K +R++ +G P V +TV RAGQ G+H R E NK+I +G
Sbjct: 224 KTVRELGSLGPISPQNVMYTVPRAGQMGFHQRIEYNKRIMAVG 266
Score = 45.2 bits (102), Expect = 0.002
Identities = 18/53 (33%), Positives = 31/53 (58%)
Frame = -1
Query: 366 EKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALEKI 208
+ +I P GG+ H+G V D++++KG G +R++ LR +R KR + I
Sbjct: 271 DDAINPSGGYKHFGMVKGDYIVLKGSVPGTYRRLVKLRAQIRNAPKRTSKPNI 323
>UniRef50_Q9UXA8 Cluster: 50S ribosomal protein L3P; n=5;
Thermoprotei|Rep: 50S ribosomal protein L3P - Sulfolobus
solfataricus
Length = 351
Score = 45.2 bits (102), Expect = 0.002
Identities = 20/41 (48%), Positives = 27/41 (65%)
Frame = -1
Query: 363 KSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLR 241
K I P GGF YG V N +V+++G +G KKR I LR+ +R
Sbjct: 290 KEINPAGGFVRYGIVRNTYVLLEGSILGSKKRPIFLREPVR 330
Score = 38.7 bits (86), Expect = 0.16
Identities = 25/61 (40%), Positives = 34/61 (55%), Gaps = 4/61 (6%)
Frame = -3
Query: 571 RHTKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIG--PR--NPQKGWQS 404
+H KG RK+ G S+T + GQ G+H RTE NK+I +IG P+ NP G+
Sbjct: 243 KHRKGSRKIGTRGP-SLGTPSYT-PQPGQLGFHRRTEYNKRIIKIGDEPKEINPAGGFVR 300
Query: 403 Y 401
Y
Sbjct: 301 Y 301
Score = 34.3 bits (75), Expect = 3.5
Identities = 16/53 (30%), Positives = 27/53 (50%)
Frame = -1
Query: 780 GKKXXXIMGIQXNXGXXGGQSEXGQRHXEKPIPVDSVFAQDEMVDCIGVTQGQ 622
GKK ++ IQ G Q + K I + VF + +++D +GVT+G+
Sbjct: 172 GKKAPDLVEIQIGGGEKKSQLDYALNILGKEITIRDVFKEGQLIDVVGVTKGK 224
>UniRef50_A7DSZ4 Cluster: Ribosomal protein L3; n=1; Candidatus
Nitrosopumilus maritimus SCM1|Rep: Ribosomal protein L3
- Candidatus Nitrosopumilus maritimus SCM1
Length = 331
Score = 44.4 bits (100), Expect = 0.003
Identities = 19/45 (42%), Positives = 27/45 (60%)
Frame = -1
Query: 375 DLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLR 241
D + I P GGF H+G V DF+++KG G +R+I LR +R
Sbjct: 271 DDDKLKINPDGGFKHFGLVKGDFIVLKGSVPGAYRRLIKLRSQIR 315
Score = 42.7 bits (96), Expect = 0.010
Identities = 20/49 (40%), Positives = 29/49 (59%)
Frame = -3
Query: 562 KGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGPRNPQK 416
K +R+V +G P V +TV RAGQ G+H R E +K+I +G + K
Sbjct: 226 KTVREVGSLGPISPQSVMYTVPRAGQFGFHQRVEYDKRIMIMGNTDDDK 274
>UniRef50_A3DNA4 Cluster: 50S ribosomal protein L3; n=1;
Staphylothermus marinus F1|Rep: 50S ribosomal protein L3
- Staphylothermus marinus (strain ATCC 43588 / DSM 3639
/ F1)
Length = 395
Score = 43.6 bits (98), Expect = 0.006
Identities = 17/39 (43%), Positives = 26/39 (66%)
Frame = -1
Query: 357 ITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLR 241
+TP GGF YG V ++M+ G +GP+KR++ LR +R
Sbjct: 334 VTPKGGFLGYGIVYGPYIMLHGSIIGPRKRLLVLRHPIR 372
Score = 36.3 bits (80), Expect = 0.87
Identities = 20/47 (42%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Frame = -3
Query: 571 RHTKGLRKVACIGAWHPSRVSFT-VARAGQKGYHHRTEMNKKIYRIG 434
+H KG RK IG+ P + + + GQ G+H RTE NK+I +IG
Sbjct: 285 KHRKGSRK---IGSRSPGFGTMSETPQPGQMGFHRRTEYNKRIIKIG 328
Score = 35.5 bits (78), Expect = 1.5
Identities = 17/56 (30%), Positives = 29/56 (51%)
Frame = -1
Query: 780 GKKXXXIMGIQXNXGXXGGQSEXGQRHXEKPIPVDSVFAQDEMVDCIGVTQGQRIQ 613
GKK I+ I+ G + + ++ + VD VF + + +D IGVT+G+ Q
Sbjct: 214 GKKKPEIIEIKIGGGTLSERIDYAEKLLGNYVTVDQVFREGQFIDIIGVTKGKGFQ 269
>UniRef50_Q9YFM2 Cluster: 50S ribosomal protein L3P; n=6;
Thermoprotei|Rep: 50S ribosomal protein L3P - Aeropyrum
pernix
Length = 344
Score = 41.9 bits (94), Expect = 0.018
Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Frame = -1
Query: 357 ITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHT--KRAALEKINLKFIDTS 184
+TP GGF YG V + FVM+ G G KR I +R ++R + + K + +I +
Sbjct: 280 VTPAGGFLRYGVVRSTFVMLSGSIPGTPKRPIVMRWAIRPPEWYLKLGVRKPEITYISLA 339
Query: 183 SKFG 172
SK G
Sbjct: 340 SKQG 343
Score = 36.3 bits (80), Expect = 0.87
Identities = 21/46 (45%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Frame = -3
Query: 571 RHTKGLRKVACIGAWHPSRVSF-TVARAGQKGYHHRTEMNKKIYRI 437
+H KG R+ IGA R +F +AGQ G+H RTE NK+I I
Sbjct: 231 KHRKGSRR---IGARSHGRSTFWETPQAGQTGFHRRTEYNKRILMI 273
Score = 33.1 bits (72), Expect = 8.1
Identities = 15/27 (55%), Positives = 19/27 (70%), Gaps = 2/27 (7%)
Frame = -2
Query: 629 KGKGYKGVTSRWHTKKLPR--KTHQGS 555
KGKG++GV RW K+LPR K +GS
Sbjct: 210 KGKGFQGVIKRWGVKELPRWHKHRKGS 236
>UniRef50_UPI00015BB2A1 Cluster: LSU ribosomal protein L3P; n=1;
Ignicoccus hospitalis KIN4/I|Rep: LSU ribosomal protein
L3P - Ignicoccus hospitalis KIN4/I
Length = 358
Score = 38.7 bits (86), Expect = 0.16
Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Frame = -3
Query: 571 RHTKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGPR----NPQKGWQS 404
+H KG R+V +W S+ V + GQ GYH RT+ NK++ I N + GW
Sbjct: 248 KHRKGSRRVGA-RSWGKGTSSY-VPQPGQMGYHRRTDYNKRVLMISDDPSKINVEGGWLH 305
Query: 403 Y 401
Y
Sbjct: 306 Y 306
Score = 37.5 bits (83), Expect = 0.38
Identities = 16/35 (45%), Positives = 23/35 (65%)
Frame = -1
Query: 345 GGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLR 241
GG+ HYG V + +V++KG GP KR I +R +R
Sbjct: 301 GGWLHYGLVKSKYVVLKGSVFGPPKRPIIMRLPVR 335
>UniRef50_Q4PDK1 Cluster: Putative uncharacterized protein; n=1;
Ustilago maydis|Rep: Putative uncharacterized protein -
Ustilago maydis (Smut fungus)
Length = 465
Score = 36.3 bits (80), Expect = 0.87
Identities = 29/96 (30%), Positives = 41/96 (42%), Gaps = 4/96 (4%)
Frame = +2
Query: 413 SFLWIPWS---NTIDFLVHFSTVMITFLTSTSYSERHPRRMPSSNAGNFPKTLGVSYGVA 583
SF+ PW+ DF F +F + ++ +P+S GN PKTL +Y V
Sbjct: 134 SFVMEPWTLCEKFDDFTSEFYNSS-SFEKQAAIAKPFYDSIPASIIGNRPKTLVNAYNVF 192
Query: 584 SLCANEK*HLCILCPWVT-PMQSTISSWANTESTGI 688
EK H L P +T M S +WA G+
Sbjct: 193 DFLNVEKIHNATLAPLITDEMLSNALTWAEYHEAGV 228
>UniRef50_Q0W544 Cluster: Phosphoenolpyruvate synthetase; n=3;
cellular organisms|Rep: Phosphoenolpyruvate synthetase -
Uncultured methanogenic archaeon RC-I
Length = 890
Score = 36.3 bits (80), Expect = 0.87
Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Frame = +1
Query: 562 WCVLRGSFFVCQ-REVTPLYPLPLGDTNAVNHFILGKH 672
WC+ G F+V Q R VT LYP+P D + ++ F+ H
Sbjct: 296 WCLAGGQFYVLQSRPVTSLYPVPRADDSRLHVFVSFGH 333
>UniRef50_Q7Z5Z5 Cluster: NPC-A-12; n=1; Homo sapiens|Rep: NPC-A-12
- Homo sapiens (Human)
Length = 103
Score = 35.5 bits (78), Expect = 1.5
Identities = 19/41 (46%), Positives = 22/41 (53%)
Frame = -2
Query: 245 CVCIQRGLH*KRSTSNSLTPRPSSVMVDSRRRLXRLHSWVH 123
C C + G +R T +SLTP PS M SR R HSW H
Sbjct: 63 CWCRRSGGLWRRLTLSSLTPPPSLAMAASRPWRRRKHSWDH 103
>UniRef50_UPI000051A196 Cluster: PREDICTED: similar to Toll-6
CG7250-PA; n=1; Apis mellifera|Rep: PREDICTED: similar
to Toll-6 CG7250-PA - Apis mellifera
Length = 1218
Score = 35.1 bits (77), Expect = 2.0
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = +2
Query: 407 LPSFLWIPWSNTIDFLVHFSTVM-ITFLTSTSYSERHPRRMPSSNAGNFPKTLGV 568
+P L+ P SN + V ++ + IT L +ERHPRR S FP +L V
Sbjct: 179 IPEHLFCPLSNLVTLNVSWNMLKDITELGFRDIAERHPRRQQESTTSPFPCSLDV 233
>UniRef50_Q4MR22 Cluster: Putative uncharacterized protein; n=1;
Bacillus cereus G9241|Rep: Putative uncharacterized
protein - Bacillus cereus G9241
Length = 218
Score = 34.3 bits (75), Expect = 3.5
Identities = 26/108 (24%), Positives = 48/108 (44%), Gaps = 5/108 (4%)
Frame = +2
Query: 431 WSNTIDFLVHFSTVMITFLTSTSYSERHPRRMPSSNAGNFPKTL-GVSYGVASLCANE-- 601
+SN+ + FST ++++ R ++P+S + FP T+ G + S C+
Sbjct: 93 FSNSFFLISKFSTTTSIIQSTSARRSRSSSKLPASISAKFPFTVRGAGFCFNSFCSAVLL 152
Query: 602 K*HLCILCPWVTPMQST--ISSWANTESTGIGFSXCLWPXSLXPPXXP 739
K L +LC V+P S+ +S+ S +G ++ P P
Sbjct: 153 KRFLTLLCSNVSPFASSSFVSAGGTISSNNVGIPILAKCAAIPEPIMP 200
>UniRef50_A0Y0D7 Cluster: Methyl-accepting chemotaxis protein; n=1;
Alteromonadales bacterium TW-7|Rep: Methyl-accepting
chemotaxis protein - Alteromonadales bacterium TW-7
Length = 676
Score = 34.3 bits (75), Expect = 3.5
Identities = 26/108 (24%), Positives = 46/108 (42%), Gaps = 7/108 (6%)
Frame = -1
Query: 456 TRKSIVLDQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGP 277
T+ + V D H++D + + +N + E+ TP+G + + F ++ GP
Sbjct: 204 TQTTSVSDLNDHQQDTQFLLDNIQPNFVYLEQQATPLGDNLNASQFTEQFNNLRSRLNGP 263
Query: 276 KKRIITLRKSLR-VHTKRAALEKINLKFIDTSS------KFGHGRFQT 154
K+L+ + + E+ +FIDT S K RFQT
Sbjct: 264 DGIYAQQNKALKNTQMAQQSFERFQQEFIDTESQLLQLNKLADERFQT 311
>UniRef50_Q8TB36 Cluster: Ganglioside-induced
differentiation-associated protein 1; n=37;
Euteleostomi|Rep: Ganglioside-induced
differentiation-associated protein 1 - Homo sapiens
(Human)
Length = 358
Score = 34.3 bits (75), Expect = 3.5
Identities = 23/70 (32%), Positives = 35/70 (50%)
Frame = +2
Query: 464 STVMITFLTSTSYSERHPRRMPSSNAGNFPKTLGVSYGVASLCANEK*HLCILCPWVTPM 643
+T +I +L T ER PR MP + +P+ + SL + H CIL P +T +
Sbjct: 90 ATQIIDYLEQTFLDERTPRLMPDKESMYYPRVQHYRELLDSLPMDAYTHGCILHPELT-V 148
Query: 644 QSTISSWANT 673
S I ++A T
Sbjct: 149 DSMIPAYATT 158
>UniRef50_A6BE46 Cluster: Putative uncharacterized protein; n=2;
Clostridiales|Rep: Putative uncharacterized protein -
Dorea longicatena DSM 13814
Length = 152
Score = 33.9 bits (74), Expect = 4.6
Identities = 16/41 (39%), Positives = 26/41 (63%)
Frame = +1
Query: 313 VVYFTIMGETSHWCNGFLRQVILSRCIVFNNFAILFVDSLV 435
+++FT GE HW + FLRQV+ RC +F A+ F+ ++
Sbjct: 41 MMFFTYQGELVHWQDDFLRQVL--RCSIFVT-AMEFITGII 78
>UniRef50_Q192G3 Cluster: Pyruvate phosphate dikinase,
PEP/pyruvate-binding; n=2; Desulfitobacterium
hafniense|Rep: Pyruvate phosphate dikinase,
PEP/pyruvate-binding - Desulfitobacterium hafniense
(strain DCB-2)
Length = 837
Score = 33.5 bits (73), Expect = 6.1
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = +1
Query: 562 WCVLRGSFFVCQ-REVTPLYPLPLGDTNAVNHFILGKH 672
WC + G FF+ Q R +T LYPLP F+ H
Sbjct: 265 WCWVNGGFFIVQSRAITTLYPLPESRDGLKRVFVSAGH 302
>UniRef50_Q17U53 Cluster: DNA-directed RNA polymerase, putative;
n=1; Solanum bulbocastanum|Rep: DNA-directed RNA
polymerase, putative - Solanum bulbocastanum (Wild
potato)
Length = 1018
Score = 33.5 bits (73), Expect = 6.1
Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Frame = -3
Query: 643 HWCHPRAKDTKVSLLVGT-QRSYPVRHTKGLRKVACIGAWHPSRVSFTVARAGQKGYHHR 467
HWCHP + +VS +V T +R+ P++ T LRK +V++T + G Y H
Sbjct: 498 HWCHPYKRMERVSGVVATLRRTNPLQMTADLRKTR-------QQVTYT-GKVGDARYPHP 549
Query: 466 TEMNKKIYRIGP 431
+ K + P
Sbjct: 550 SHWGKVCFLSTP 561
>UniRef50_Q6KI55 Cluster: 50S ribosomal protein L3; n=11;
Bacteria|Rep: 50S ribosomal protein L3 - Mycoplasma
mobile
Length = 297
Score = 33.1 bits (72), Expect = 8.1
Identities = 11/42 (26%), Positives = 26/42 (61%)
Frame = -1
Query: 324 EVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALEKINLK 199
++ N+ +++KG GPK + ++ +++ R A+E +N+K
Sbjct: 181 DIKNNILLVKGSVPGPKNCFLIIKSAIKNLPSREAIELVNIK 222
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 782,730,809
Number of Sequences: 1657284
Number of extensions: 16393243
Number of successful extensions: 38144
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 36918
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38134
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 66673674990
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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