Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_T7_C01
(786 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein L3|Sch... 159 3e-40
SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3 |Schiz... 159 3e-40
SPAC17D4.02 |cdc45|sna41, goa1|DNA replication pre-initiation co... 28 1.7
SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr... 27 4.0
SPBC21C3.06 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 26 7.0
>SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein
L3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 388
Score = 159 bits (387), Expect = 3e-40
Identities = 94/222 (42%), Positives = 125/222 (56%)
Frame = -1
Query: 777 KKXXXIMGIQXNXGXXGGQSEXGQRHXEKPIPVDSVFAQDEMVDCIGVTQGQRIQRCHFS 598
+K +M IQ N G + E + H EK + + S F Q+EM+D IGVT+G+ +
Sbjct: 173 QKKAHLMEIQVNGGSVADKVEWAREHFEKTVDIKSTFEQNEMIDVIGVTRGKGNEGTTAR 232
Query: 597 LAHKEATP*DTPRVLGKLPALELGILLGCRSL*LVLVRKVIITVLK*TRKSIVLDQGIHK 418
K P T R L K+ + + + R + T+ L+ I++
Sbjct: 233 WGTKRL-PRKTHRGLRKVACIGAWHPANVQ---WTVARAGNAGYMHRTQ----LNSKIYR 284
Query: 417 KDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRV 238
NAST++D +EK ITPMGGF YG V NDFVM+ G GP KR++TLRKSL
Sbjct: 285 IGAGDDAKNASTDFDATEKRITPMGGFVRYGVVENDFVMLNGATPGPVKRVLTLRKSLLT 344
Query: 237 HTKRAALEKINLKFIDTSSKFGHGRFQTPAXKAAFMGTLKKD 112
HT R ALE ++LK+IDT+SKFGHGRFQTPA F+GTLKKD
Sbjct: 345 HTSRKALEPVSLKWIDTASKFGHGRFQTPAEAKQFLGTLKKD 386
Score = 80.6 bits (190), Expect = 2e-16
Identities = 37/60 (61%), Positives = 45/60 (75%)
Frame = -3
Query: 595 GTQRSYPVRHTKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGPRNPQK 416
GT+R P + +GLRKVACIGAWHP+ V +TVARAG GY HRT++N KIYRIG + K
Sbjct: 234 GTKR-LPRKTHRGLRKVACIGAWHPANVQWTVARAGNAGYMHRTQLNSKIYRIGAGDDAK 292
Score = 49.6 bits (113), Expect = 5e-07
Identities = 25/74 (33%), Positives = 39/74 (52%)
Frame = -2
Query: 779 AKRXXTLWESXLTGGXXGXKVXXARDXWRNLSLSILCLPKMKWLTALVSPKGKGYKGVTS 600
A++ L E + GG KV AR+ + + + + + +GKG +G T+
Sbjct: 172 AQKKAHLMEIQVNGGSVADKVEWAREHFEKTVDIKSTFEQNEMIDVIGVTRGKGNEGTTA 231
Query: 599 RWHTKKLPRKTHQG 558
RW TK+LPRKTH+G
Sbjct: 232 RWGTKRLPRKTHRG 245
>SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 388
Score = 159 bits (387), Expect = 3e-40
Identities = 94/222 (42%), Positives = 125/222 (56%)
Frame = -1
Query: 777 KKXXXIMGIQXNXGXXGGQSEXGQRHXEKPIPVDSVFAQDEMVDCIGVTQGQRIQRCHFS 598
+K +M IQ N G + E + H EK + + S F Q+EM+D IGVT+G+ +
Sbjct: 173 QKKAHLMEIQVNGGSVADKVEWAREHFEKTVDIKSTFEQNEMIDVIGVTRGKGNEGTTAR 232
Query: 597 LAHKEATP*DTPRVLGKLPALELGILLGCRSL*LVLVRKVIITVLK*TRKSIVLDQGIHK 418
K P T R L K+ + + + R + T+ L+ I++
Sbjct: 233 WGTKRL-PRKTHRGLRKVACIGAWHPANVQ---WTVARAGNAGYMHRTQ----LNSKIYR 284
Query: 417 KDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRV 238
NAST++D +EK ITPMGGF YG V NDFVM+ G GP KR++TLRKSL
Sbjct: 285 IGAGDDAKNASTDFDATEKRITPMGGFVRYGVVENDFVMLNGATPGPVKRVLTLRKSLLT 344
Query: 237 HTKRAALEKINLKFIDTSSKFGHGRFQTPAXKAAFMGTLKKD 112
HT R ALE ++LK+IDT+SKFGHGRFQTPA F+GTLKKD
Sbjct: 345 HTSRKALEPVSLKWIDTASKFGHGRFQTPAEAKQFLGTLKKD 386
Score = 80.6 bits (190), Expect = 2e-16
Identities = 37/60 (61%), Positives = 45/60 (75%)
Frame = -3
Query: 595 GTQRSYPVRHTKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGPRNPQK 416
GT+R P + +GLRKVACIGAWHP+ V +TVARAG GY HRT++N KIYRIG + K
Sbjct: 234 GTKR-LPRKTHRGLRKVACIGAWHPANVQWTVARAGNAGYMHRTQLNSKIYRIGAGDDAK 292
Score = 49.6 bits (113), Expect = 5e-07
Identities = 25/74 (33%), Positives = 39/74 (52%)
Frame = -2
Query: 779 AKRXXTLWESXLTGGXXGXKVXXARDXWRNLSLSILCLPKMKWLTALVSPKGKGYKGVTS 600
A++ L E + GG KV AR+ + + + + + +GKG +G T+
Sbjct: 172 AQKKAHLMEIQVNGGSVADKVEWAREHFEKTVDIKSTFEQNEMIDVIGVTRGKGNEGTTA 231
Query: 599 RWHTKKLPRKTHQG 558
RW TK+LPRKTH+G
Sbjct: 232 RWGTKRLPRKTHRG 245
>SPAC17D4.02 |cdc45|sna41, goa1|DNA replication pre-initiation
complex subunit Cdc45|Schizosaccharomyces pombe|chr
1|||Manual
Length = 638
Score = 27.9 bits (59), Expect = 1.7
Identities = 16/49 (32%), Positives = 24/49 (48%)
Frame = -2
Query: 497 SCWSERLSSPY*NEQENLSYWTKESTKRMAKLLKTMHLLSMTCLRNPLH 351
S + L S Y + L W++E KR+ KLL M L + C + +H
Sbjct: 322 SLYDSMLHSAYVGSR--LHIWSEEGRKRLHKLLAKMGLSLVECKQTYIH 368
>SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 511
Score = 26.6 bits (56), Expect = 4.0
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -3
Query: 133 HGYTQEGSYSRRSCGYHNPS 74
HGY+ + R+ C YHNPS
Sbjct: 307 HGYSMY-ALERKMCNYHNPS 325
>SPBC21C3.06 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 122
Score = 25.8 bits (54), Expect = 7.0
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = +2
Query: 380 SVDALFLITLPSFLWIPW 433
+VDA+F I+ +FLW W
Sbjct: 11 TVDAIFAISSSTFLWSTW 28
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,220,562
Number of Sequences: 5004
Number of extensions: 68553
Number of successful extensions: 180
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 381366860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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