Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_T7_C01
(786 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0427 + 3274817-3274901,3275587-3275697,3275979-3276283,327... 165 3e-41
12_01_0435 + 3428552-3428636,3429242-3429352,3429434-3429738,342... 158 4e-39
03_05_1096 - 30364144-30365310,30365825-30365971,30366087-303663... 29 3.2
07_01_0761 + 5849466-5850677 29 5.5
12_01_0582 - 4752576-4752786,4752955-4753037,4753324-4753530,475... 28 9.7
03_05_0901 + 28635672-28636094,28637623-28637802,28637903-286381... 28 9.7
>11_01_0427 +
3274817-3274901,3275587-3275697,3275979-3276283,
3276406-3276815,3276942-3277200
Length = 389
Score = 165 bits (402), Expect = 3e-41
Identities = 101/225 (44%), Positives = 130/225 (57%), Gaps = 5/225 (2%)
Frame = -1
Query: 777 KKXXXIMGIQXNXGXXGGQSEXGQRHXEKPIPVDSVFAQDEMVDCIGVTQGQRIQRCHFS 598
+K +M IQ N G + + G + EK IPVD+VF +DEM+D IGVT+G+ + +
Sbjct: 176 QKKAHLMEIQINGGTIADKVDYGYKFFEKEIPVDAVFQKDEMIDIIGVTKGKGYEGV-VT 234
Query: 597 LAHKEATP*DTPRVLGKLPALELGILLGCRSL*LVLVRKVIITVLK*TRKSIVLDQGIHK 418
P T R L K+ + G R V TV + + ++K
Sbjct: 235 RWGVTRLPRKTHRGLRKVACI--GAWHPAR---------VSYTVARAGQNGYHHRTEMNK 283
Query: 417 KDGKVIKNN-----ASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLR 253
K K+ K+ A TE+D +EK ITPMGGFPHYG V D++MIKGCC+GPKKR++TLR
Sbjct: 284 KVYKIGKSGQESHAACTEFDRTEKDITPMGGFPHYGVVKGDYLMIKGCCVGPKKRVVTLR 343
Query: 252 KSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPAXKAAFMGTLK 118
+SL T R ALE+I LKFIDTSSKFGHGRFQT K F G LK
Sbjct: 344 QSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQTTDEKQRFFGKLK 388
Score = 91.9 bits (218), Expect = 5e-19
Identities = 38/48 (79%), Positives = 44/48 (91%)
Frame = -3
Query: 577 PVRHTKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIG 434
P + +GLRKVACIGAWHP+RVS+TVARAGQ GYHHRTEMNKK+Y+IG
Sbjct: 242 PRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIG 289
Score = 44.0 bits (99), Expect = 1e-04
Identities = 23/68 (33%), Positives = 32/68 (47%)
Frame = -2
Query: 761 LWESXLTGGXXGXKVXXARDXWRNLSLSILCLPKMKWLTALVSPKGKGYKGVTSRWHTKK 582
L E + GG KV + K + + + KGKGY+GV +RW +
Sbjct: 181 LMEIQINGGTIADKVDYGYKFFEKEIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTR 240
Query: 581 LPRKTHQG 558
LPRKTH+G
Sbjct: 241 LPRKTHRG 248
>12_01_0435 +
3428552-3428636,3429242-3429352,3429434-3429738,
3429821-3430230,3430323-3430556,3430934-3431378,
3432300-3432390,3433292-3433518,3433786-3433861,
3434009-3434134,3434221-3434384
Length = 757
Score = 158 bits (384), Expect = 4e-39
Identities = 97/217 (44%), Positives = 126/217 (58%), Gaps = 5/217 (2%)
Frame = -1
Query: 777 KKXXXIMGIQXNXGXXGGQSEXGQRHXEKPIPVDSVFAQDEMVDCIGVTQGQRIQRCHFS 598
+K +M IQ N G + + G + EK IPVD+VF +DEM+D IGVT+G+ + +
Sbjct: 176 QKKAHLMEIQINGGTIADKVDYGYKFFEKEIPVDAVFQKDEMIDIIGVTKGKGYEGV-VT 234
Query: 597 LAHKEATP*DTPRVLGKLPALELGILLGCRSL*LVLVRKVIITVLK*TRKSIVLDQGIHK 418
P T R L K+ + G R V TV + + ++K
Sbjct: 235 RWGVTRLPRKTHRGLRKVACI--GAWHPAR---------VSYTVARAGQNGYHHRTEMNK 283
Query: 417 KDGKVIKNN-----ASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLR 253
K K+ K+ A TE+D +EK ITPMGGFPHYG V D++MIKGCC+GPKKR++TLR
Sbjct: 284 KVYKIGKSGQESHAACTEFDRTEKDITPMGGFPHYGVVKGDYLMIKGCCVGPKKRVVTLR 343
Query: 252 KSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPAXK 142
+SL T R ALE+I LKFIDTSSKFGHGRFQT K
Sbjct: 344 QSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQTTDEK 380
Score = 91.9 bits (218), Expect = 5e-19
Identities = 38/48 (79%), Positives = 44/48 (91%)
Frame = -3
Query: 577 PVRHTKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIG 434
P + +GLRKVACIGAWHP+RVS+TVARAGQ GYHHRTEMNKK+Y+IG
Sbjct: 242 PRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIG 289
Score = 44.0 bits (99), Expect = 1e-04
Identities = 23/68 (33%), Positives = 32/68 (47%)
Frame = -2
Query: 761 LWESXLTGGXXGXKVXXARDXWRNLSLSILCLPKMKWLTALVSPKGKGYKGVTSRWHTKK 582
L E + GG KV + K + + + KGKGY+GV +RW +
Sbjct: 181 LMEIQINGGTIADKVDYGYKFFEKEIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTR 240
Query: 581 LPRKTHQG 558
LPRKTH+G
Sbjct: 241 LPRKTHRG 248
>03_05_1096 - 30364144-30365310,30365825-30365971,30366087-30366393,
30366541-30366849,30367544-30370567,30370640-30372290,
30372373-30373463,30373544-30373646,30373737-30374439,
30374654-30375783,30375913-30376027,30376504-30376695,
30377443-30377616,30378438-30378494,30378581-30378716,
30378842-30378927,30379023-30379092,30379993-30380021,
30380444-30380456,30380762-30381006
Length = 3582
Score = 29.5 bits (63), Expect = 3.2
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = -1
Query: 375 DLSEKSITPMGGFPHYGEVNNDFVMIKGCCMG 280
D + + +P+GG P YG ++ D + C +G
Sbjct: 1371 DPTSAAASPIGGIPRYGRLSGDVYVCNQCTIG 1402
>07_01_0761 + 5849466-5850677
Length = 403
Score = 28.7 bits (61), Expect = 5.5
Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
Frame = -3
Query: 610 VSLLVGTQRSYPVRHTKGLRKVACI--GAWHPSRVSFTVARAGQKGYHHR 467
V+LLVG R V V+ + G HP SFT+ RA H+
Sbjct: 129 VALLVGNDRRLRVLDAAASAAVSLVPDGEHHPINCSFTLGRAASSSGEHK 178
>12_01_0582 -
4752576-4752786,4752955-4753037,4753324-4753530,
4755128-4755207,4756853-4756998,4757088-4757719
Length = 452
Score = 27.9 bits (59), Expect = 9.7
Identities = 11/44 (25%), Positives = 22/44 (50%)
Frame = +2
Query: 347 IGVMDFSDKSYSVDALFLITLPSFLWIPWSNTIDFLVHFSTVMI 478
+ +DF + ++ +L LPS W W + + + VH ++ I
Sbjct: 392 LSAIDFLKHAADLNTRWLKRLPSNFWATWVHPLTYKVHVKSLWI 435
>03_05_0901 +
28635672-28636094,28637623-28637802,28637903-28638172,
28638506-28638757,28639205-28639453,28639533-28639606,
28639798-28639915,28640421-28640555,28640813-28640965
Length = 617
Score = 27.9 bits (59), Expect = 9.7
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = -3
Query: 499 ARAGQKGYHHRTEMNKKIYRIGPRNPQ 419
+RA GY + +E N +IYR+ R+P+
Sbjct: 590 SRADNLGYEYMSEQNNEIYRLLLRDPK 616
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,687,274
Number of Sequences: 37544
Number of extensions: 469139
Number of successful extensions: 1148
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1148
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2115411120
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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