Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_T7_C01
(786 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_14332| Best HMM Match : Ribosomal_L3 (HMM E-Value=8.6e-34) 138 4e-33
SB_51931| Best HMM Match : Ribosomal_L3 (HMM E-Value=0) 93 2e-19
SB_7140| Best HMM Match : No HMM Matches (HMM E-Value=.) 62 4e-10
SB_57037| Best HMM Match : RVT_1 (HMM E-Value=3.4e-15) 33 0.35
SB_56220| Best HMM Match : RVT_1 (HMM E-Value=3.7e-16) 33 0.35
SB_37487| Best HMM Match : RVT_1 (HMM E-Value=0.03) 33 0.35
SB_33284| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.35
SB_30332| Best HMM Match : RVT_1 (HMM E-Value=2.7e-34) 33 0.35
SB_28979| Best HMM Match : RVT_1 (HMM E-Value=1.6e-40) 33 0.35
SB_26992| Best HMM Match : rve (HMM E-Value=6.3e-36) 33 0.35
SB_51232| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.35
SB_23276| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.35
SB_11067| Best HMM Match : RVT_1 (HMM E-Value=0) 33 0.35
SB_30592| Best HMM Match : MAM (HMM E-Value=2.66247e-44) 31 1.4
SB_13763| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.8
SB_6540| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.4
SB_51282| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.2
SB_28036| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.6
SB_26123| Best HMM Match : NHL (HMM E-Value=3.5e-08) 28 7.5
SB_50676| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.5
SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.9
SB_4606| Best HMM Match : HlyIII (HMM E-Value=0.002) 28 9.9
>SB_14332| Best HMM Match : Ribosomal_L3 (HMM E-Value=8.6e-34)
Length = 347
Score = 138 bits (335), Expect = 4e-33
Identities = 62/82 (75%), Positives = 69/82 (84%)
Frame = -1
Query: 345 GGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHG 166
GGFPHYG+VN DF+M+KGC +GPKKR++TLRKSL VHT R A EKI LKFIDTSSKFGHG
Sbjct: 215 GGFPHYGQVNEDFLMVKGCVVGPKKRVLTLRKSLLVHTSRDAAEKITLKFIDTSSKFGHG 274
Query: 165 RFQTPAXKAAFMGTLKKDRIRE 100
RFQ PA K AFMG LK DR +E
Sbjct: 275 RFQHPAEKRAFMGMLKSDREKE 296
>SB_51931| Best HMM Match : Ribosomal_L3 (HMM E-Value=0)
Length = 338
Score = 93.5 bits (222), Expect = 2e-19
Identities = 42/54 (77%), Positives = 48/54 (88%)
Frame = -3
Query: 595 GTQRSYPVRHTKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIG 434
GT++ P + KGLRKVACIGAWHP+RVSF+VARAGQ GYHHRTE+NKKIYRIG
Sbjct: 236 GTKK-LPRKTHKGLRKVACIGAWHPARVSFSVARAGQAGYHHRTELNKKIYRIG 288
Score = 79.8 bits (188), Expect = 2e-15
Identities = 58/147 (39%), Positives = 77/147 (52%), Gaps = 3/147 (2%)
Frame = -1
Query: 777 KKXXXIMGIQXNXGXXGGQS-EXGQRHXEKPIPVDSVFAQDEMVDCIGVTQGQRIQRCHF 601
+K IM IQ N G + + + E P PV VF+ DEM+D IGVT+G + +
Sbjct: 174 QKKAHIMEIQVNGGKDVAEKVDWCRERLENPAPVRKVFSPDEMIDVIGVTKGHGFKGVTY 233
Query: 600 SLAHKEATP*DTPRVLGKLPALELGILLGCR-SL*LVLVRKVIITVLK*TRKSIV-LDQG 427
K+ P T + L K+ + G R S + + K I + QG
Sbjct: 234 RWGTKKL-PRKTHKGLRKVACI--GAWHPARVSFSVARAGQAGYHHRTELNKKIYRIGQG 290
Query: 426 IHKKDGKVIKNNASTEYDLSEKSITPM 346
IHKKDGKVIKNNASTEYDL++KSI+PM
Sbjct: 291 IHKKDGKVIKNNASTEYDLTDKSISPM 317
Score = 47.2 bits (107), Expect = 2e-05
Identities = 19/24 (79%), Positives = 21/24 (87%)
Frame = -2
Query: 629 KGKGYKGVTSRWHTKKLPRKTHQG 558
KG G+KGVT RW TKKLPRKTH+G
Sbjct: 224 KGHGFKGVTYRWGTKKLPRKTHKG 247
>SB_7140| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 58
Score = 62.5 bits (145), Expect = 4e-10
Identities = 28/36 (77%), Positives = 32/36 (88%)
Frame = -1
Query: 453 RKSIVLDQGIHKKDGKVIKNNASTEYDLSEKSITPM 346
+K + QGIHKKDGKVIKNNASTEYDL++KSITPM
Sbjct: 11 KKIYRIGQGIHKKDGKVIKNNASTEYDLTDKSITPM 46
Score = 39.5 bits (88), Expect = 0.003
Identities = 15/16 (93%), Positives = 16/16 (100%)
Frame = -3
Query: 481 GYHHRTEMNKKIYRIG 434
GYHHRTE+NKKIYRIG
Sbjct: 2 GYHHRTELNKKIYRIG 17
>SB_57037| Best HMM Match : RVT_1 (HMM E-Value=3.4e-15)
Length = 291
Score = 32.7 bits (71), Expect = 0.35
Identities = 18/43 (41%), Positives = 29/43 (67%), Gaps = 1/43 (2%)
Frame = -2
Query: 461 NEQENLSYWTKESTKRMAKLLKTMHLLSMTCLRNP-LHQWEVS 336
++ +NLS W+ T +MA + HLLS+T RNP LH++E++
Sbjct: 166 HDLDNLSDWS--DTWQMAFNVSKCHLLSVTNKRNPSLHEYEIN 206
>SB_56220| Best HMM Match : RVT_1 (HMM E-Value=3.7e-16)
Length = 453
Score = 32.7 bits (71), Expect = 0.35
Identities = 18/43 (41%), Positives = 29/43 (67%), Gaps = 1/43 (2%)
Frame = -2
Query: 461 NEQENLSYWTKESTKRMAKLLKTMHLLSMTCLRNP-LHQWEVS 336
++ +NLS W+ T +MA + HLLS+T RNP LH++E++
Sbjct: 197 HDLDNLSDWS--DTWQMAFNVSKCHLLSVTNKRNPSLHEYEIN 237
>SB_37487| Best HMM Match : RVT_1 (HMM E-Value=0.03)
Length = 347
Score = 32.7 bits (71), Expect = 0.35
Identities = 18/43 (41%), Positives = 29/43 (67%), Gaps = 1/43 (2%)
Frame = -2
Query: 461 NEQENLSYWTKESTKRMAKLLKTMHLLSMTCLRNP-LHQWEVS 336
++ +NLS W+ T +MA + HLLS+T RNP LH++E++
Sbjct: 268 HDLDNLSDWS--DTWQMAFNVSKCHLLSVTNKRNPSLHEYEIN 308
>SB_33284| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 263
Score = 32.7 bits (71), Expect = 0.35
Identities = 18/43 (41%), Positives = 29/43 (67%), Gaps = 1/43 (2%)
Frame = -2
Query: 461 NEQENLSYWTKESTKRMAKLLKTMHLLSMTCLRNP-LHQWEVS 336
++ +NLS W+ T +MA + HLLS+T RNP LH++E++
Sbjct: 52 HDLDNLSDWS--DTWQMAFNVSKCHLLSVTNKRNPSLHEYEIN 92
>SB_30332| Best HMM Match : RVT_1 (HMM E-Value=2.7e-34)
Length = 1683
Score = 32.7 bits (71), Expect = 0.35
Identities = 18/43 (41%), Positives = 29/43 (67%), Gaps = 1/43 (2%)
Frame = -2
Query: 461 NEQENLSYWTKESTKRMAKLLKTMHLLSMTCLRNP-LHQWEVS 336
++ +NLS W+ T +MA + HLLS+T RNP LH++E++
Sbjct: 1084 HDLDNLSDWS--DTWQMAFNVSKCHLLSVTNKRNPSLHEYEIN 1124
Score = 32.7 bits (71), Expect = 0.35
Identities = 18/43 (41%), Positives = 29/43 (67%), Gaps = 1/43 (2%)
Frame = -2
Query: 461 NEQENLSYWTKESTKRMAKLLKTMHLLSMTCLRNP-LHQWEVS 336
++ +NLS W+ T +MA + HLLS+T RNP LH++E++
Sbjct: 1276 HDLDNLSDWS--DTWQMAFNVSKCHLLSVTNKRNPSLHEYEIN 1316
>SB_28979| Best HMM Match : RVT_1 (HMM E-Value=1.6e-40)
Length = 892
Score = 32.7 bits (71), Expect = 0.35
Identities = 18/43 (41%), Positives = 29/43 (67%), Gaps = 1/43 (2%)
Frame = -2
Query: 461 NEQENLSYWTKESTKRMAKLLKTMHLLSMTCLRNP-LHQWEVS 336
++ +NLS W+ T +MA + HLLS+T RNP LH++E++
Sbjct: 636 HDLDNLSDWS--DTWQMAFNVSKCHLLSVTNKRNPSLHEYEIN 676
>SB_26992| Best HMM Match : rve (HMM E-Value=6.3e-36)
Length = 1022
Score = 32.7 bits (71), Expect = 0.35
Identities = 18/43 (41%), Positives = 29/43 (67%), Gaps = 1/43 (2%)
Frame = -2
Query: 461 NEQENLSYWTKESTKRMAKLLKTMHLLSMTCLRNP-LHQWEVS 336
++ +NLS W+ T +MA + HLLS+T RNP LH++E++
Sbjct: 825 HDLDNLSDWS--DTWQMAFNVSKCHLLSVTNKRNPSLHEYEIN 865
>SB_51232| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1676
Score = 32.7 bits (71), Expect = 0.35
Identities = 18/43 (41%), Positives = 29/43 (67%), Gaps = 1/43 (2%)
Frame = -2
Query: 461 NEQENLSYWTKESTKRMAKLLKTMHLLSMTCLRNP-LHQWEVS 336
++ +NLS W+ T +MA + HLLS+T RNP LH++E++
Sbjct: 888 HDLDNLSDWS--DTWQMAFNVSKCHLLSVTNKRNPSLHEYEIN 928
>SB_23276| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 193
Score = 32.7 bits (71), Expect = 0.35
Identities = 18/43 (41%), Positives = 29/43 (67%), Gaps = 1/43 (2%)
Frame = -2
Query: 461 NEQENLSYWTKESTKRMAKLLKTMHLLSMTCLRNP-LHQWEVS 336
++ +NLS W+ T +MA + HLLS+T RNP LH++E++
Sbjct: 68 HDLDNLSDWS--DTWQMAFNVSKCHLLSVTNKRNPSLHEYEIN 108
>SB_11067| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 1176
Score = 32.7 bits (71), Expect = 0.35
Identities = 18/43 (41%), Positives = 29/43 (67%), Gaps = 1/43 (2%)
Frame = -2
Query: 461 NEQENLSYWTKESTKRMAKLLKTMHLLSMTCLRNP-LHQWEVS 336
++ +NLS W+ T +MA + HLLS+T RNP LH++E++
Sbjct: 972 HDLDNLSDWS--DTWQMAFNVSKCHLLSVTNKRNPSLHEYEIN 1012
>SB_30592| Best HMM Match : MAM (HMM E-Value=2.66247e-44)
Length = 667
Score = 30.7 bits (66), Expect = 1.4
Identities = 26/100 (26%), Positives = 44/100 (44%), Gaps = 2/100 (2%)
Frame = +1
Query: 163 STMTELGRGVNEFEVDLF*CSPLCMHTQRLSKS-NDTLFRSHAATLDHHKVVVYFTIMGE 339
S + ++ G N E CS LS S ND LF D K + +
Sbjct: 192 SEIIQIRFGSNFTETQSTDCSSKKQPNLPLSISENDGLFEGDIVLTDEQKTQLNSRAAIK 251
Query: 340 TSHWCNGFLRQVILSRCIVFNNFAILFVDS-LVQYDRFSC 456
T+HW NG + L I +++A+ ++S + +Y++ +C
Sbjct: 252 TNHWTNGVV-PYELDPSISSSSYAVSVINSAIAEYNQKTC 290
>SB_13763| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 319
Score = 30.3 bits (65), Expect = 1.8
Identities = 18/56 (32%), Positives = 26/56 (46%)
Frame = +2
Query: 464 STVMITFLTSTSYSERHPRRMPSSNAGNFPKTLGVSYGVASLCANEK*HLCILCPW 631
S I+F +T Y +RH RR S N +F + G ++L N K CP+
Sbjct: 96 SRTPISFPNTTQYRDRHARRSRSQNGVSFLINIATLVGDSALGTNIKPAPYSSCPF 151
>SB_6540| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 366
Score = 29.9 bits (64), Expect = 2.4
Identities = 14/50 (28%), Positives = 24/50 (48%)
Frame = -1
Query: 276 KKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPAXKAAFMG 127
K R++ +K ++H+ + K ++F+ SKF H T A A G
Sbjct: 317 KDRLLEWKKERQIHSFSSTTLKARIRFVAAMSKFAHTTEDTTAWDEATKG 366
>SB_51282| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 217
Score = 29.5 bits (63), Expect = 3.2
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = -1
Query: 420 KKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIK 295
KK V +N+ T D + + GFPHY + +D + IK
Sbjct: 44 KKCWTVTQNDVPTPLDCGLSAWRILSGFPHYKLIEDDHIEIK 85
>SB_28036| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 489
Score = 28.7 bits (61), Expect = 5.6
Identities = 21/73 (28%), Positives = 33/73 (45%)
Frame = +1
Query: 49 RHLRLRSSRWGCGSRSFFANTILLECTHECSLXSRRLESTMTELGRGVNEFEVDLF*CSP 228
RH R RS+ ++ TI++ CT C +R ST + R E + + C+
Sbjct: 387 RHTRKRSTSVDRSRKAQENQTIVISCTCFC---HKRKRSTSVDRSRQAQENQTIVISCTC 443
Query: 229 LCMHTQRLSKSND 267
C H ++ S S D
Sbjct: 444 FC-HKRKRSTSVD 455
>SB_26123| Best HMM Match : NHL (HMM E-Value=3.5e-08)
Length = 545
Score = 28.3 bits (60), Expect = 7.5
Identities = 14/42 (33%), Positives = 18/42 (42%)
Frame = -3
Query: 163 IPDAG*XGCIHGYTQEGSYSRRSCGYHNPSGCCAALSVVREN 38
I D G CIH +T +G Y C + + G REN
Sbjct: 410 ISDDG-ANCIHVFTLDGQYVSNECSWESHEGYTHIAVTAREN 450
>SB_50676| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 838
Score = 28.3 bits (60), Expect = 7.5
Identities = 17/39 (43%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Frame = -2
Query: 461 NEQENLSYWTKESTKRMAKLLKTMHLLSMTCLRNP-LHQ 348
++ +NLS W+ T +MA + HLLS+T RNP LH+
Sbjct: 802 HDLDNLSDWS--DTWQMAFNVSKCHLLSVTNKRNPSLHE 838
>SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 6489
Score = 27.9 bits (59), Expect = 9.9
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = -1
Query: 393 NASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCC 286
++STE++ + + G F +G+V ND + CC
Sbjct: 3492 HSSTEFNSTLRGGIKSGKFKDFGKVRNDVDCVNRCC 3527
>SB_4606| Best HMM Match : HlyIII (HMM E-Value=0.002)
Length = 458
Score = 27.9 bits (59), Expect = 9.9
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +1
Query: 31 NVYFHGRHLRLRSSRWGCGSRSFFANTILLE 123
N+Y HG L LR +GCGS +L++
Sbjct: 368 NIYSHGVRLFLRYLGYGCGSDGALPYCVLMD 398
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,939,508
Number of Sequences: 59808
Number of extensions: 556771
Number of successful extensions: 1196
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1196
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2155861620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -