Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_T7_C01
(786 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z69337-1|CAA93269.1| 401|Caenorhabditis elegans ribosomal prote... 178 4e-45
Z69336-1|CAA93268.1| 401|Caenorhabditis elegans ribosomal prote... 178 4e-45
Z66495-15|CAH04728.1| 303|Caenorhabditis elegans Hypothetical p... 178 4e-45
Z66495-12|CAA91277.1| 401|Caenorhabditis elegans Hypothetical p... 178 4e-45
Z49936-8|CAH10798.1| 303|Caenorhabditis elegans Hypothetical pr... 178 4e-45
Z49936-6|CAA90183.1| 401|Caenorhabditis elegans Hypothetical pr... 178 4e-45
Z66495-14|CAH04729.1| 353|Caenorhabditis elegans Hypothetical p... 150 1e-36
Z49936-7|CAH10799.1| 353|Caenorhabditis elegans Hypothetical pr... 150 1e-36
AF125451-3|AAD12821.2| 193|Caenorhabditis elegans Hypothetical ... 28 6.6
>Z69337-1|CAA93269.1| 401|Caenorhabditis elegans ribosomal protein
L3 protein.
Length = 401
Score = 178 bits (433), Expect = 4e-45
Identities = 106/236 (44%), Positives = 142/236 (60%), Gaps = 8/236 (3%)
Frame = -1
Query: 783 RGKKXXXIMGIQXNXGXXGGQSEXGQRHXEKPIPVDSVFAQDEMVDCIGVTQGQRIQRCH 604
R +K ++ IQ N G + + + H EK + VD+VFAQDEM+D IGVT+G +
Sbjct: 173 RRQKKAHLVEIQVNGGTIEQKVDWAREHLEKQVQVDTVFAQDEMIDTIGVTRGHGFKGVT 232
Query: 603 FSLAHKEATP*DTPRVLGKLPALELGILLGCRSL*LVLVRKVIITVLK*TRKSI----VL 436
S H + P T + L K+ + G R V TV + +K ++
Sbjct: 233 -SRWHTKKLPRKTHKGLRKVACI--GAWHPSR---------VAFTVARAGQKGFHHRTII 280
Query: 435 DQGIHKKDGKVI----KNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKR 268
+ I++ + KNN STE+DL++K+ITPMGGFP YG VN D++M++G +GPKKR
Sbjct: 281 NNKIYRIGKSALTEEGKNNGSTEFDLTQKTITPMGGFPRYGIVNQDYIMLRGAVLGPKKR 340
Query: 267 IITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPAXKAAFMGTLKKDRIRE 100
+ITLRKSL TKR A EKINLK+IDTSSK GHGRFQT A K AFMG LK+D + E
Sbjct: 341 LITLRKSLITQTKRVAHEKINLKWIDTSSKTGHGRFQTTAEKRAFMGKLKRDFLAE 396
Score = 89.8 bits (213), Expect = 2e-18
Identities = 39/51 (76%), Positives = 44/51 (86%)
Frame = -3
Query: 586 RSYPVRHTKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIG 434
+ P + KGLRKVACIGAWHPSRV+FTVARAGQKG+HHRT +N KIYRIG
Sbjct: 238 KKLPRKTHKGLRKVACIGAWHPSRVAFTVARAGQKGFHHRTIINNKIYRIG 288
Score = 55.2 bits (127), Expect = 5e-08
Identities = 28/68 (41%), Positives = 37/68 (54%)
Frame = -2
Query: 761 LWESXLTGGXXGXKVXXARDXWRNLSLSILCLPKMKWLTALVSPKGKGYKGVTSRWHTKK 582
L E + GG KV AR+ + + + + +G G+KGVTSRWHTKK
Sbjct: 180 LVEIQVNGGTIEQKVDWAREHLEKQVQVDTVFAQDEMIDTIGVTRGHGFKGVTSRWHTKK 239
Query: 581 LPRKTHQG 558
LPRKTH+G
Sbjct: 240 LPRKTHKG 247
>Z69336-1|CAA93268.1| 401|Caenorhabditis elegans ribosomal protein
L3 protein.
Length = 401
Score = 178 bits (433), Expect = 4e-45
Identities = 106/236 (44%), Positives = 142/236 (60%), Gaps = 8/236 (3%)
Frame = -1
Query: 783 RGKKXXXIMGIQXNXGXXGGQSEXGQRHXEKPIPVDSVFAQDEMVDCIGVTQGQRIQRCH 604
R +K ++ IQ N G + + + H EK + VD+VFAQDEM+D IGVT+G +
Sbjct: 173 RRQKKAHLVEIQVNGGTIEQKVDWAREHLEKQVQVDTVFAQDEMIDTIGVTRGHGFKGVT 232
Query: 603 FSLAHKEATP*DTPRVLGKLPALELGILLGCRSL*LVLVRKVIITVLK*TRKSI----VL 436
S H + P T + L K+ + G R V TV + +K ++
Sbjct: 233 -SRWHTKKLPRKTHKGLRKVACI--GAWHPSR---------VAFTVARAGQKGFHHRTII 280
Query: 435 DQGIHKKDGKVI----KNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKR 268
+ I++ + KNN STE+DL++K+ITPMGGFP YG VN D++M++G +GPKKR
Sbjct: 281 NNKIYRIGKSALTEEGKNNGSTEFDLTQKTITPMGGFPRYGIVNQDYIMLRGAVLGPKKR 340
Query: 267 IITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPAXKAAFMGTLKKDRIRE 100
+ITLRKSL TKR A EKINLK+IDTSSK GHGRFQT A K AFMG LK+D + E
Sbjct: 341 LITLRKSLITQTKRVAHEKINLKWIDTSSKTGHGRFQTTAEKRAFMGKLKRDFLAE 396
Score = 89.8 bits (213), Expect = 2e-18
Identities = 39/51 (76%), Positives = 44/51 (86%)
Frame = -3
Query: 586 RSYPVRHTKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIG 434
+ P + KGLRKVACIGAWHPSRV+FTVARAGQKG+HHRT +N KIYRIG
Sbjct: 238 KKLPRKTHKGLRKVACIGAWHPSRVAFTVARAGQKGFHHRTIINNKIYRIG 288
Score = 55.2 bits (127), Expect = 5e-08
Identities = 28/68 (41%), Positives = 37/68 (54%)
Frame = -2
Query: 761 LWESXLTGGXXGXKVXXARDXWRNLSLSILCLPKMKWLTALVSPKGKGYKGVTSRWHTKK 582
L E + GG KV AR+ + + + + +G G+KGVTSRWHTKK
Sbjct: 180 LVEIQVNGGTIEQKVDWAREHLEKQVQVDTVFAQDEMIDTIGVTRGHGFKGVTSRWHTKK 239
Query: 581 LPRKTHQG 558
LPRKTH+G
Sbjct: 240 LPRKTHKG 247
>Z66495-15|CAH04728.1| 303|Caenorhabditis elegans Hypothetical
protein F13B10.2d protein.
Length = 303
Score = 178 bits (433), Expect = 4e-45
Identities = 106/236 (44%), Positives = 142/236 (60%), Gaps = 8/236 (3%)
Frame = -1
Query: 783 RGKKXXXIMGIQXNXGXXGGQSEXGQRHXEKPIPVDSVFAQDEMVDCIGVTQGQRIQRCH 604
R +K ++ IQ N G + + + H EK + VD+VFAQDEM+D IGVT+G +
Sbjct: 75 RRQKKAHLVEIQVNGGTIEQKVDWAREHLEKQVQVDTVFAQDEMIDTIGVTRGHGFKGVT 134
Query: 603 FSLAHKEATP*DTPRVLGKLPALELGILLGCRSL*LVLVRKVIITVLK*TRKSI----VL 436
S H + P T + L K+ + G R V TV + +K ++
Sbjct: 135 -SRWHTKKLPRKTHKGLRKVACI--GAWHPSR---------VAFTVARAGQKGFHHRTII 182
Query: 435 DQGIHKKDGKVI----KNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKR 268
+ I++ + KNN STE+DL++K+ITPMGGFP YG VN D++M++G +GPKKR
Sbjct: 183 NNKIYRIGKSALTEEGKNNGSTEFDLTQKTITPMGGFPRYGIVNQDYIMLRGAVLGPKKR 242
Query: 267 IITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPAXKAAFMGTLKKDRIRE 100
+ITLRKSL TKR A EKINLK+IDTSSK GHGRFQT A K AFMG LK+D + E
Sbjct: 243 LITLRKSLITQTKRVAHEKINLKWIDTSSKTGHGRFQTTAEKRAFMGKLKRDFLAE 298
Score = 89.8 bits (213), Expect = 2e-18
Identities = 39/51 (76%), Positives = 44/51 (86%)
Frame = -3
Query: 586 RSYPVRHTKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIG 434
+ P + KGLRKVACIGAWHPSRV+FTVARAGQKG+HHRT +N KIYRIG
Sbjct: 140 KKLPRKTHKGLRKVACIGAWHPSRVAFTVARAGQKGFHHRTIINNKIYRIG 190
Score = 55.2 bits (127), Expect = 5e-08
Identities = 28/68 (41%), Positives = 37/68 (54%)
Frame = -2
Query: 761 LWESXLTGGXXGXKVXXARDXWRNLSLSILCLPKMKWLTALVSPKGKGYKGVTSRWHTKK 582
L E + GG KV AR+ + + + + +G G+KGVTSRWHTKK
Sbjct: 82 LVEIQVNGGTIEQKVDWAREHLEKQVQVDTVFAQDEMIDTIGVTRGHGFKGVTSRWHTKK 141
Query: 581 LPRKTHQG 558
LPRKTH+G
Sbjct: 142 LPRKTHKG 149
>Z66495-12|CAA91277.1| 401|Caenorhabditis elegans Hypothetical
protein F13B10.2a protein.
Length = 401
Score = 178 bits (433), Expect = 4e-45
Identities = 106/236 (44%), Positives = 142/236 (60%), Gaps = 8/236 (3%)
Frame = -1
Query: 783 RGKKXXXIMGIQXNXGXXGGQSEXGQRHXEKPIPVDSVFAQDEMVDCIGVTQGQRIQRCH 604
R +K ++ IQ N G + + + H EK + VD+VFAQDEM+D IGVT+G +
Sbjct: 173 RRQKKAHLVEIQVNGGTIEQKVDWAREHLEKQVQVDTVFAQDEMIDTIGVTRGHGFKGVT 232
Query: 603 FSLAHKEATP*DTPRVLGKLPALELGILLGCRSL*LVLVRKVIITVLK*TRKSI----VL 436
S H + P T + L K+ + G R V TV + +K ++
Sbjct: 233 -SRWHTKKLPRKTHKGLRKVACI--GAWHPSR---------VAFTVARAGQKGFHHRTII 280
Query: 435 DQGIHKKDGKVI----KNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKR 268
+ I++ + KNN STE+DL++K+ITPMGGFP YG VN D++M++G +GPKKR
Sbjct: 281 NNKIYRIGKSALTEEGKNNGSTEFDLTQKTITPMGGFPRYGIVNQDYIMLRGAVLGPKKR 340
Query: 267 IITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPAXKAAFMGTLKKDRIRE 100
+ITLRKSL TKR A EKINLK+IDTSSK GHGRFQT A K AFMG LK+D + E
Sbjct: 341 LITLRKSLITQTKRVAHEKINLKWIDTSSKTGHGRFQTTAEKRAFMGKLKRDFLAE 396
Score = 89.8 bits (213), Expect = 2e-18
Identities = 39/51 (76%), Positives = 44/51 (86%)
Frame = -3
Query: 586 RSYPVRHTKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIG 434
+ P + KGLRKVACIGAWHPSRV+FTVARAGQKG+HHRT +N KIYRIG
Sbjct: 238 KKLPRKTHKGLRKVACIGAWHPSRVAFTVARAGQKGFHHRTIINNKIYRIG 288
Score = 55.2 bits (127), Expect = 5e-08
Identities = 28/68 (41%), Positives = 37/68 (54%)
Frame = -2
Query: 761 LWESXLTGGXXGXKVXXARDXWRNLSLSILCLPKMKWLTALVSPKGKGYKGVTSRWHTKK 582
L E + GG KV AR+ + + + + +G G+KGVTSRWHTKK
Sbjct: 180 LVEIQVNGGTIEQKVDWAREHLEKQVQVDTVFAQDEMIDTIGVTRGHGFKGVTSRWHTKK 239
Query: 581 LPRKTHQG 558
LPRKTH+G
Sbjct: 240 LPRKTHKG 247
>Z49936-8|CAH10798.1| 303|Caenorhabditis elegans Hypothetical
protein F13B10.2d protein.
Length = 303
Score = 178 bits (433), Expect = 4e-45
Identities = 106/236 (44%), Positives = 142/236 (60%), Gaps = 8/236 (3%)
Frame = -1
Query: 783 RGKKXXXIMGIQXNXGXXGGQSEXGQRHXEKPIPVDSVFAQDEMVDCIGVTQGQRIQRCH 604
R +K ++ IQ N G + + + H EK + VD+VFAQDEM+D IGVT+G +
Sbjct: 75 RRQKKAHLVEIQVNGGTIEQKVDWAREHLEKQVQVDTVFAQDEMIDTIGVTRGHGFKGVT 134
Query: 603 FSLAHKEATP*DTPRVLGKLPALELGILLGCRSL*LVLVRKVIITVLK*TRKSI----VL 436
S H + P T + L K+ + G R V TV + +K ++
Sbjct: 135 -SRWHTKKLPRKTHKGLRKVACI--GAWHPSR---------VAFTVARAGQKGFHHRTII 182
Query: 435 DQGIHKKDGKVI----KNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKR 268
+ I++ + KNN STE+DL++K+ITPMGGFP YG VN D++M++G +GPKKR
Sbjct: 183 NNKIYRIGKSALTEEGKNNGSTEFDLTQKTITPMGGFPRYGIVNQDYIMLRGAVLGPKKR 242
Query: 267 IITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPAXKAAFMGTLKKDRIRE 100
+ITLRKSL TKR A EKINLK+IDTSSK GHGRFQT A K AFMG LK+D + E
Sbjct: 243 LITLRKSLITQTKRVAHEKINLKWIDTSSKTGHGRFQTTAEKRAFMGKLKRDFLAE 298
Score = 89.8 bits (213), Expect = 2e-18
Identities = 39/51 (76%), Positives = 44/51 (86%)
Frame = -3
Query: 586 RSYPVRHTKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIG 434
+ P + KGLRKVACIGAWHPSRV+FTVARAGQKG+HHRT +N KIYRIG
Sbjct: 140 KKLPRKTHKGLRKVACIGAWHPSRVAFTVARAGQKGFHHRTIINNKIYRIG 190
Score = 55.2 bits (127), Expect = 5e-08
Identities = 28/68 (41%), Positives = 37/68 (54%)
Frame = -2
Query: 761 LWESXLTGGXXGXKVXXARDXWRNLSLSILCLPKMKWLTALVSPKGKGYKGVTSRWHTKK 582
L E + GG KV AR+ + + + + +G G+KGVTSRWHTKK
Sbjct: 82 LVEIQVNGGTIEQKVDWAREHLEKQVQVDTVFAQDEMIDTIGVTRGHGFKGVTSRWHTKK 141
Query: 581 LPRKTHQG 558
LPRKTH+G
Sbjct: 142 LPRKTHKG 149
>Z49936-6|CAA90183.1| 401|Caenorhabditis elegans Hypothetical
protein F13B10.2a protein.
Length = 401
Score = 178 bits (433), Expect = 4e-45
Identities = 106/236 (44%), Positives = 142/236 (60%), Gaps = 8/236 (3%)
Frame = -1
Query: 783 RGKKXXXIMGIQXNXGXXGGQSEXGQRHXEKPIPVDSVFAQDEMVDCIGVTQGQRIQRCH 604
R +K ++ IQ N G + + + H EK + VD+VFAQDEM+D IGVT+G +
Sbjct: 173 RRQKKAHLVEIQVNGGTIEQKVDWAREHLEKQVQVDTVFAQDEMIDTIGVTRGHGFKGVT 232
Query: 603 FSLAHKEATP*DTPRVLGKLPALELGILLGCRSL*LVLVRKVIITVLK*TRKSI----VL 436
S H + P T + L K+ + G R V TV + +K ++
Sbjct: 233 -SRWHTKKLPRKTHKGLRKVACI--GAWHPSR---------VAFTVARAGQKGFHHRTII 280
Query: 435 DQGIHKKDGKVI----KNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKR 268
+ I++ + KNN STE+DL++K+ITPMGGFP YG VN D++M++G +GPKKR
Sbjct: 281 NNKIYRIGKSALTEEGKNNGSTEFDLTQKTITPMGGFPRYGIVNQDYIMLRGAVLGPKKR 340
Query: 267 IITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPAXKAAFMGTLKKDRIRE 100
+ITLRKSL TKR A EKINLK+IDTSSK GHGRFQT A K AFMG LK+D + E
Sbjct: 341 LITLRKSLITQTKRVAHEKINLKWIDTSSKTGHGRFQTTAEKRAFMGKLKRDFLAE 396
Score = 89.8 bits (213), Expect = 2e-18
Identities = 39/51 (76%), Positives = 44/51 (86%)
Frame = -3
Query: 586 RSYPVRHTKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIG 434
+ P + KGLRKVACIGAWHPSRV+FTVARAGQKG+HHRT +N KIYRIG
Sbjct: 238 KKLPRKTHKGLRKVACIGAWHPSRVAFTVARAGQKGFHHRTIINNKIYRIG 288
Score = 55.2 bits (127), Expect = 5e-08
Identities = 28/68 (41%), Positives = 37/68 (54%)
Frame = -2
Query: 761 LWESXLTGGXXGXKVXXARDXWRNLSLSILCLPKMKWLTALVSPKGKGYKGVTSRWHTKK 582
L E + GG KV AR+ + + + + +G G+KGVTSRWHTKK
Sbjct: 180 LVEIQVNGGTIEQKVDWAREHLEKQVQVDTVFAQDEMIDTIGVTRGHGFKGVTSRWHTKK 239
Query: 581 LPRKTHQG 558
LPRKTH+G
Sbjct: 240 LPRKTHKG 247
>Z66495-14|CAH04729.1| 353|Caenorhabditis elegans Hypothetical
protein F13B10.2c protein.
Length = 353
Score = 150 bits (364), Expect = 1e-36
Identities = 69/100 (69%), Positives = 82/100 (82%)
Frame = -1
Query: 399 KNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAA 220
KNN STE+DL++K+ITPMGGFP YG VN D++M++G +GPKKR+ITLRKSL TKR A
Sbjct: 249 KNNGSTEFDLTQKTITPMGGFPRYGIVNQDYIMLRGAVLGPKKRLITLRKSLITQTKRVA 308
Query: 219 LEKINLKFIDTSSKFGHGRFQTPAXKAAFMGTLKKDRIRE 100
EKINLK+IDTSSK GHGRFQT A K AFMG LK+D + E
Sbjct: 309 HEKINLKWIDTSSKTGHGRFQTTAEKRAFMGKLKRDFLAE 348
Score = 89.8 bits (213), Expect = 2e-18
Identities = 39/51 (76%), Positives = 44/51 (86%)
Frame = -3
Query: 586 RSYPVRHTKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIG 434
+ P + KGLRKVACIGAWHPSRV+FTVARAGQKG+HHRT +N KIYRIG
Sbjct: 190 KKLPRKTHKGLRKVACIGAWHPSRVAFTVARAGQKGFHHRTIINNKIYRIG 240
Score = 52.8 bits (121), Expect = 3e-07
Identities = 22/41 (53%), Positives = 29/41 (70%)
Frame = -2
Query: 680 SILCLPKMKWLTALVSPKGKGYKGVTSRWHTKKLPRKTHQG 558
SI + + + + +G G+KGVTSRWHTKKLPRKTH+G
Sbjct: 159 SIRVIAHTQMIDTIGVTRGHGFKGVTSRWHTKKLPRKTHKG 199
>Z49936-7|CAH10799.1| 353|Caenorhabditis elegans Hypothetical
protein F13B10.2c protein.
Length = 353
Score = 150 bits (364), Expect = 1e-36
Identities = 69/100 (69%), Positives = 82/100 (82%)
Frame = -1
Query: 399 KNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAA 220
KNN STE+DL++K+ITPMGGFP YG VN D++M++G +GPKKR+ITLRKSL TKR A
Sbjct: 249 KNNGSTEFDLTQKTITPMGGFPRYGIVNQDYIMLRGAVLGPKKRLITLRKSLITQTKRVA 308
Query: 219 LEKINLKFIDTSSKFGHGRFQTPAXKAAFMGTLKKDRIRE 100
EKINLK+IDTSSK GHGRFQT A K AFMG LK+D + E
Sbjct: 309 HEKINLKWIDTSSKTGHGRFQTTAEKRAFMGKLKRDFLAE 348
Score = 89.8 bits (213), Expect = 2e-18
Identities = 39/51 (76%), Positives = 44/51 (86%)
Frame = -3
Query: 586 RSYPVRHTKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIG 434
+ P + KGLRKVACIGAWHPSRV+FTVARAGQKG+HHRT +N KIYRIG
Sbjct: 190 KKLPRKTHKGLRKVACIGAWHPSRVAFTVARAGQKGFHHRTIINNKIYRIG 240
Score = 52.8 bits (121), Expect = 3e-07
Identities = 22/41 (53%), Positives = 29/41 (70%)
Frame = -2
Query: 680 SILCLPKMKWLTALVSPKGKGYKGVTSRWHTKKLPRKTHQG 558
SI + + + + +G G+KGVTSRWHTKKLPRKTH+G
Sbjct: 159 SIRVIAHTQMIDTIGVTRGHGFKGVTSRWHTKKLPRKTHKG 199
>AF125451-3|AAD12821.2| 193|Caenorhabditis elegans Hypothetical
protein Y37E11B.1a protein.
Length = 193
Score = 28.3 bits (60), Expect = 6.6
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Frame = +1
Query: 376 ILSR-CIVFNNFAILFVDSLVQYDRFSCSFQYGDDNLSDQHEL 501
IL R ++F FAI F RF+C Y +LSD ++
Sbjct: 99 ILERNLLIFGYFAIFFSQKNTYISRFTCPMCYASFDLSDPFKI 141
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,072,929
Number of Sequences: 27780
Number of extensions: 397564
Number of successful extensions: 994
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 917
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 992
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1903721438
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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