Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_T7_C01
(786 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g43170.2 68414.m04975 60S ribosomal protein L3 (RPL3A) identi... 151 4e-37
At1g43170.1 68414.m04974 60S ribosomal protein L3 (RPL3A) identi... 151 4e-37
At1g61580.1 68414.m06939 60S ribosomal protein L3 (RPL3B) identi... 145 3e-35
At5g49660.1 68418.m06147 leucine-rich repeat transmembrane prote... 28 6.1
At5g44770.1 68418.m05487 DC1 domain-containing protein contains ... 28 6.1
At1g67420.1 68414.m07674 24 kDa vacuolar protein, putative simil... 28 6.1
At4g36150.1 68417.m05145 disease resistance protein (TIR-NBS-LRR... 28 8.1
>At1g43170.2 68414.m04975 60S ribosomal protein L3 (RPL3A) identical
to ribosomal protein GI:166858 from [Arabidopsis
thaliana]
Length = 389
Score = 151 bits (367), Expect = 4e-37
Identities = 95/226 (42%), Positives = 127/226 (56%), Gaps = 5/226 (2%)
Frame = -1
Query: 777 KKXXXIMGIQXNXGXXGGQSEXGQRHXEKPIPVDSVFAQDEMVDCIGVTQGQRIQRCHFS 598
+K +M IQ N G + + EK IP+++VF +DEM+D IGVT+G+ + +
Sbjct: 176 QKKAHMMEIQINGGTIAQKVDFAYSFFEKQIPIEAVFQKDEMIDIIGVTKGKGYEGV-VT 234
Query: 597 LAHKEATP*DTPRVLGKLPALELGILLGCRSL*LVLVRKVIITVLK*TRKSIVLDQGIHK 418
P T R L K+ + G R V TV + + ++K
Sbjct: 235 RWGVTRLPRKTHRGLRKVACI--GAWHPAR---------VSYTVARAGQNGYHHRTELNK 283
Query: 417 KD---GKV--IKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLR 253
K GKV + A TEYD +EK +TPMGGFPHYG V +D++MIKGCC+GPKKR++TLR
Sbjct: 284 KIYRLGKVGTEAHTAMTEYDRTEKDVTPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLR 343
Query: 252 KSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPAXKAAFMGTLKK 115
+SL T R ALE+I LKFIDT+S FGHGRFQT K F + K
Sbjct: 344 QSLLTQTSRLALEEIKLKFIDTASIFGHGRFQTSLEKMRFYNRVTK 389
Score = 91.5 bits (217), Expect = 6e-19
Identities = 38/48 (79%), Positives = 44/48 (91%)
Frame = -3
Query: 577 PVRHTKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIG 434
P + +GLRKVACIGAWHP+RVS+TVARAGQ GYHHRTE+NKKIYR+G
Sbjct: 242 PRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTELNKKIYRLG 289
Score = 45.6 bits (103), Expect = 4e-05
Identities = 23/68 (33%), Positives = 33/68 (48%)
Frame = -2
Query: 761 LWESXLTGGXXGXKVXXARDXWRNLSLSILCLPKMKWLTALVSPKGKGYKGVTSRWHTKK 582
+ E + GG KV A + K + + + KGKGY+GV +RW +
Sbjct: 181 MMEIQINGGTIAQKVDFAYSFFEKQIPIEAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTR 240
Query: 581 LPRKTHQG 558
LPRKTH+G
Sbjct: 241 LPRKTHRG 248
>At1g43170.1 68414.m04974 60S ribosomal protein L3 (RPL3A) identical
to ribosomal protein GI:166858 from [Arabidopsis
thaliana]
Length = 389
Score = 151 bits (367), Expect = 4e-37
Identities = 95/226 (42%), Positives = 127/226 (56%), Gaps = 5/226 (2%)
Frame = -1
Query: 777 KKXXXIMGIQXNXGXXGGQSEXGQRHXEKPIPVDSVFAQDEMVDCIGVTQGQRIQRCHFS 598
+K +M IQ N G + + EK IP+++VF +DEM+D IGVT+G+ + +
Sbjct: 176 QKKAHMMEIQINGGTIAQKVDFAYSFFEKQIPIEAVFQKDEMIDIIGVTKGKGYEGV-VT 234
Query: 597 LAHKEATP*DTPRVLGKLPALELGILLGCRSL*LVLVRKVIITVLK*TRKSIVLDQGIHK 418
P T R L K+ + G R V TV + + ++K
Sbjct: 235 RWGVTRLPRKTHRGLRKVACI--GAWHPAR---------VSYTVARAGQNGYHHRTELNK 283
Query: 417 KD---GKV--IKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLR 253
K GKV + A TEYD +EK +TPMGGFPHYG V +D++MIKGCC+GPKKR++TLR
Sbjct: 284 KIYRLGKVGTEAHTAMTEYDRTEKDVTPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLR 343
Query: 252 KSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPAXKAAFMGTLKK 115
+SL T R ALE+I LKFIDT+S FGHGRFQT K F + K
Sbjct: 344 QSLLTQTSRLALEEIKLKFIDTASIFGHGRFQTSLEKMRFYNRVTK 389
Score = 91.5 bits (217), Expect = 6e-19
Identities = 38/48 (79%), Positives = 44/48 (91%)
Frame = -3
Query: 577 PVRHTKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIG 434
P + +GLRKVACIGAWHP+RVS+TVARAGQ GYHHRTE+NKKIYR+G
Sbjct: 242 PRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTELNKKIYRLG 289
Score = 45.6 bits (103), Expect = 4e-05
Identities = 23/68 (33%), Positives = 33/68 (48%)
Frame = -2
Query: 761 LWESXLTGGXXGXKVXXARDXWRNLSLSILCLPKMKWLTALVSPKGKGYKGVTSRWHTKK 582
+ E + GG KV A + K + + + KGKGY+GV +RW +
Sbjct: 181 MMEIQINGGTIAQKVDFAYSFFEKQIPIEAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTR 240
Query: 581 LPRKTHQG 558
LPRKTH+G
Sbjct: 241 LPRKTHRG 248
>At1g61580.1 68414.m06939 60S ribosomal protein L3 (RPL3B) identical
to ribosomal protein GI:806279 from [Arabidopsis
thaliana]
Length = 390
Score = 145 bits (352), Expect = 3e-35
Identities = 93/226 (41%), Positives = 127/226 (56%), Gaps = 6/226 (2%)
Frame = -1
Query: 777 KKXXXIMGIQXNXGXXGGQSEXGQRHXEKPIPVDSVFAQDEMVDCIGVTQGQRIQRCHFS 598
+K + IQ N G + + EK +PVD++F +DEM+D IGVT+G+ + +
Sbjct: 176 QKKAHLNEIQINGGDIAKKVDYACSLFEKQVPVDAIFQKDEMIDIIGVTKGKGYEGV-VT 234
Query: 597 LAHKEATP*DTPRVLGKLPALELGILLGCRSL*LVLVRKVIITVLK*TRKSIVLDQGIHK 418
P T R L K+ + G R V TV + + ++K
Sbjct: 235 RWGVTRLPRKTHRGLRKVACI--GAWHPAR---------VSYTVARAGQNGYHHRTEMNK 283
Query: 417 KDGKVIK-----NNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLR 253
K +V K ++A TEYD +EK ITPMGGFPHYG V D++MIKGCC+GPKKR++TLR
Sbjct: 284 KVYRVGKVGQETHSAMTEYDRTEKDITPMGGFPHYGIVKEDYLMIKGCCVGPKKRVVTLR 343
Query: 252 KSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPAXKAAFMG-TLK 118
++L T R A+E+I LKFID +S GHGRFQT KA F G T+K
Sbjct: 344 QTLLKQTSRLAMEEIKLKFIDAASNGGHGRFQTSQEKAKFYGRTIK 389
Score = 92.7 bits (220), Expect = 3e-19
Identities = 38/48 (79%), Positives = 44/48 (91%)
Frame = -3
Query: 577 PVRHTKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIG 434
P + +GLRKVACIGAWHP+RVS+TVARAGQ GYHHRTEMNKK+YR+G
Sbjct: 242 PRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYRVG 289
Score = 44.8 bits (101), Expect = 7e-05
Identities = 23/66 (34%), Positives = 32/66 (48%)
Frame = -2
Query: 755 ESXLTGGXXGXKVXXARDXWRNLSLSILCLPKMKWLTALVSPKGKGYKGVTSRWHTKKLP 576
E + GG KV A + K + + + KGKGY+GV +RW +LP
Sbjct: 183 EIQINGGDIAKKVDYACSLFEKQVPVDAIFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLP 242
Query: 575 RKTHQG 558
RKTH+G
Sbjct: 243 RKTHRG 248
>At5g49660.1 68418.m06147 leucine-rich repeat transmembrane protein
kinase, putative contains leucine rich repeat (LRR)
domains, Pfam:PF00560; contains protein kinase domain,
Pfam:PF00069
Length = 966
Score = 28.3 bits (60), Expect = 6.1
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -2
Query: 461 NEQENLSYWTKESTKRMAKLLKTMHLLSMTCL 366
NE L WT + ++KL K H+L MTC+
Sbjct: 177 NENPELDLWTLPDS--VSKLTKLTHMLLMTCM 206
>At5g44770.1 68418.m05487 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 541
Score = 28.3 bits (60), Expect = 6.1
Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
Frame = -1
Query: 357 ITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRK---SLRVHTKRAALEK 211
I P+ P Y V DF + KGC P+K+ L SLR H ++K
Sbjct: 286 ILPINDDPCYKCVECDFCLHKGCASLPRKKAHFLHNHKISLRAHKDDVYVDK 337
>At1g67420.1 68414.m07674 24 kDa vacuolar protein, putative similar
to 24 kDa vacuolar protein VP24 [Ipomoea batatas]
gi|5821406|dbj|BAA83809
Length = 873
Score = 28.3 bits (60), Expect = 6.1
Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 6/65 (9%)
Frame = +2
Query: 422 WIPWSNTIDFLVHFSTVMITFLTS-TSYSERHPRRMP-----SSNAGNFPKTLGVSYGVA 583
W+ S+ + FL+HF+ VM+ + YS+ P+R+ S GN + G SY +A
Sbjct: 617 WLAKSSILKFLLHFTVVMLAVSSQFFPYSKDAPKRVVLQHTFISTGGN--EITGSSYDLA 674
Query: 584 SLCAN 598
+ +N
Sbjct: 675 VIDSN 679
>At4g36150.1 68417.m05145 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1179
Score = 27.9 bits (59), Expect = 8.1
Identities = 23/67 (34%), Positives = 34/67 (50%)
Frame = -1
Query: 564 PRVLGKLPALELGILLGCRSL*LVLVRKVIITVLK*TRKSIVLDQGIHKKDGKVIKNNAS 385
P LGKL AL+ +L GC L V I +K + ++LD K+ K+++ N+S
Sbjct: 782 PEFLGKLKALQELVLSGCSKL---KTFSVPIETMK-CLQILLLDGTALKEMPKLLRFNSS 837
Query: 384 TEYDLSE 364
DL E
Sbjct: 838 RVEDLPE 844
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,208,018
Number of Sequences: 28952
Number of extensions: 374737
Number of successful extensions: 957
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 916
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 957
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1765546400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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