Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_B24
         (813 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q6AW70 Cluster: Coat protein; n=1; Bombyx mori Macula-l...   107   2e-22
UniRef50_Q8UZB5 Cluster: Coat protein; n=1; Grapevine fleck viru...    37   0.70 
UniRef50_Q71EB5 Cluster: 25kDa coat protein; n=1; Grapevine Red ...    37   0.70 
UniRef50_Q8DM37 Cluster: Tll0286 protein; n=1; Synechococcus elo...    33   8.6  

>UniRef50_Q6AW70 Cluster: Coat protein; n=1; Bombyx mori Macula-like
           latent virus|Rep: Coat protein - Bombyx mori Macula-like
           latent virus
          Length = 237

 Score =  107 bits (258), Expect = 2e-22
 Identities = 50/54 (92%), Positives = 51/54 (94%)
 Frame = -3

Query: 670 IIKSPIPYTNHPRXDIHFHQSPDAVXEGVRAGVKASVVIRGSISVSHPLVTGHG 509
           IIKSPIPYTNHPR +IHFHQS DAV EGVRAGVKASVVIRGSISVSHPLVTGHG
Sbjct: 184 IIKSPIPYTNHPRLNIHFHQSADAVLEGVRAGVKASVVIRGSISVSHPLVTGHG 237



 Score = 37.5 bits (83), Expect = 0.40
 Identities = 19/33 (57%), Positives = 21/33 (63%)
 Frame = -2

Query: 770 VXATPFILWXLXLGXXAXMHQATLPWDXGYINP 672
           V ATP     + +G  A MHQATLP D GYINP
Sbjct: 152 VLATPSSA-RITMGGLALMHQATLPCDLGYINP 183


>UniRef50_Q8UZB5 Cluster: Coat protein; n=1; Grapevine fleck
           virus|Rep: Coat protein - Grapevine fleck virus
          Length = 230

 Score = 36.7 bits (81), Expect = 0.70
 Identities = 21/70 (30%), Positives = 31/70 (44%)
 Frame = -3

Query: 733 WGXXPLCIKPPSPGXLXTSTRIIKSPIPYTNHPRXDIHFHQSPDAVXEGVRAGVKASVVI 554
           WG          P  L +    IK  + YT+ PR    F+++   V  G  A +  S++I
Sbjct: 154 WGSVHFSAPILLPAELSSLNPTIKDSVTYTDCPRLTCGFYRNDACVALGSSAPICGSILI 213

Query: 553 RGSISVSHPL 524
           RG I  S P+
Sbjct: 214 RGVIECSAPI 223


>UniRef50_Q71EB5 Cluster: 25kDa coat protein; n=1; Grapevine Red
           Globe virus|Rep: 25kDa coat protein - Grapevine Red
           Globe virus
          Length = 235

 Score = 36.7 bits (81), Expect = 0.70
 Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
 Frame = -3

Query: 697 PGXLXTSTRIIKSPIPYTNHPRXDIHFHQSPDAVXEGVRAGV-KASVVIRGSISVS 533
           P  L ++  ++K  + Y N P+  + FH++ DA    V   V   S+VIRG +  S
Sbjct: 170 PADLRSTNPVVKDTVSYNNTPKLTVAFHKNTDAPAVSVTTPVIYGSIVIRGVVRCS 225


>UniRef50_Q8DM37 Cluster: Tll0286 protein; n=1; Synechococcus
           elongatus|Rep: Tll0286 protein - Synechococcus elongatus
           (Thermosynechococcus elongatus)
          Length = 158

 Score = 33.1 bits (72), Expect = 8.6
 Identities = 20/75 (26%), Positives = 33/75 (44%)
 Frame = -2

Query: 461 LRALLVVIPRILRSPPPTHPLIEDVVMATNQAIIHYKVKIADNNLVTHKELALKVSSIIG 282
           L  LL+VIP  L   P +H +I  +  A NQ ++  +  + DN   T + +       + 
Sbjct: 8   LLLLLLVIPLWLAVSPRSHAMIRTIEEAPNQVVVQSRHPLRDNRGFTWQVILFSRPDQLQ 67

Query: 281 TRVYVFDPSCYFSTP 237
            R+  F    +F  P
Sbjct: 68  LRLVGFPEQYHFRHP 82


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 746,406,969
Number of Sequences: 1657284
Number of extensions: 13985461
Number of successful extensions: 35509
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 33894
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35470
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 70377768045
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)