Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_T7_B24
(813 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g47170.1 68416.m05122 transferase family protein low similari... 35 0.074
At2g42460.1 68415.m05253 meprin and TRAF homology domain-contain... 30 1.6
At2g24980.1 68415.m02987 proline-rich extensin-like family prote... 30 2.1
At1g61520.1 68414.m06931 chlorophyll A-B binding protein / LHCI ... 29 2.8
At5g06630.1 68418.m00749 proline-rich extensin-like family prote... 29 3.7
At3g47590.1 68416.m05181 esterase/lipase/thioesterase family pro... 28 6.4
At1g06170.2 68414.m00649 basic helix-loop-helix (bHLH) family pr... 28 8.5
At1g06170.1 68414.m00648 basic helix-loop-helix (bHLH) family pr... 28 8.5
>At3g47170.1 68416.m05122 transferase family protein low similarity
to 10-deacetylbaccatin III-10-O-acetyl transferase Taxus
cuspidata GI:6746554; contains Pfam profile PF02458
transferase family
Length = 468
Score = 34.7 bits (76), Expect = 0.074
Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 2/75 (2%)
Frame = -2
Query: 470 NHKLRALLVVIPRILRSPP-PTHPLIEDVVMATNQAIIHYK-VKIADNNLVTHKELALKV 297
N K LV + + SP PT ++ +++ T++ I K + I D NL KE +K+
Sbjct: 222 NDKNNPKLVDVEKDCSSPDTPTEDMVREILNITSEDITKLKNIIIEDENLTNEKEKNMKI 281
Query: 296 SSIIGTRVYVFDPSC 252
+++ YV+ C
Sbjct: 282 TTVEVLAAYVWRARC 296
>At2g42460.1 68415.m05253 meprin and TRAF homology domain-containing
protein / MATH domain-containing protein weak similarity
to ubiquitin-specific protease 12 [Arabidopsis thaliana]
GI:11993471; contains Pfam profile PF00917: MATH domain
Length = 441
Score = 30.3 bits (65), Expect = 1.6
Identities = 15/45 (33%), Positives = 25/45 (55%)
Frame = -2
Query: 443 VIPRILRSPPPTHPLIEDVVMATNQAIIHYKVKIADNNLVTHKEL 309
V P++L PL E+ + N+ II +VK+A+ +T KE+
Sbjct: 273 VEPKMLSFKDYASPLQEEGFLENNKLIIRVEVKVAEEGYLTGKEM 317
>At2g24980.1 68415.m02987 proline-rich extensin-like family protein
contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 559
Score = 29.9 bits (64), Expect = 2.1
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = -1
Query: 588 EFAPGLKPPLSSEAPSAYLTPSSLDMXKGVSPPY 487
++AP KP + S P Y TPS K PPY
Sbjct: 44 KYAPHPKPYVKSSPPPQYYTPSPKVNYKSPPPPY 77
>At1g61520.1 68414.m06931 chlorophyll A-B binding protein / LHCI
type III (LHCA3.1) nearly identical to PSI type III
chlorophyll a/b-binding protein GI:430947; contains Pfam
profile: PF00504 chlorophyll A-B binding protein;
similar to PSI type III chlorophyll a/b-binding protein
GI:430947 from [Arabidopsis thaliana]
Length = 273
Score = 29.5 bits (63), Expect = 2.8
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = +2
Query: 485 K*GGETPLXMSSDEGVRYADGASDDNGGFNPGANSFXYGVRGLME 619
K G PL +S + + Y DG+ + GF+P S G G +E
Sbjct: 48 KQGANRPLWFASSQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIE 92
>At5g06630.1 68418.m00749 proline-rich extensin-like family protein
contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 440
Score = 29.1 bits (62), Expect = 3.7
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = -1
Query: 588 EFAPGLKPPLSSEAPSAYLTPSSLDMXKGVSPPY 487
++AP KP + S P Y TPS K PPY
Sbjct: 50 KYAPHPKPYVYSSPPPPYYTPSPKVNYKSPPPPY 83
>At3g47590.1 68416.m05181 esterase/lipase/thioesterase family
protein low similarity to cinnamoyl ester hydrolase CinI
[Butyrivibrio fibrisolvens] GI:1622732; contains
Interpro entry IPR000379
Length = 309
Score = 28.3 bits (60), Expect = 6.4
Identities = 16/52 (30%), Positives = 24/52 (46%)
Frame = -2
Query: 272 YVFDPSCYFSTPPFDTVLYDNIRTXXKDNKTALLSASIQASLPSSEIYRQLV 117
+V S Y+ T PF T + N+R K+N+ + A PS I Q +
Sbjct: 10 FVPQDSPYYKTSPFPTSSFFNVRFPIKNNQISCNKAKNLRMDPSKGIQEQRI 61
>At1g06170.2 68414.m00649 basic helix-loop-helix (bHLH) family
protein contains Pfam profile:PF00010 helix-loop-helix
DNA-binding domain
Length = 420
Score = 27.9 bits (59), Expect = 8.5
Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 5/70 (7%)
Frame = -2
Query: 548 LHQRISPPRHWT----WXKGFRPLIFK*MMNHKLRALLVVIPRILRSPPP-THPLIEDVV 384
+HQ + P + W G++ + NH LL ++ S PP +P I+D++
Sbjct: 91 MHQTLQDPSYAQQSNHWDNGYQDFV-NLGPNHTTPDLLSLLQLPRSSLPPFANPSIQDII 149
Query: 383 MATNQAIIHY 354
M T+ ++ Y
Sbjct: 150 MTTSSSVAAY 159
>At1g06170.1 68414.m00648 basic helix-loop-helix (bHLH) family
protein contains Pfam profile:PF00010 helix-loop-helix
DNA-binding domain
Length = 420
Score = 27.9 bits (59), Expect = 8.5
Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 5/70 (7%)
Frame = -2
Query: 548 LHQRISPPRHWT----WXKGFRPLIFK*MMNHKLRALLVVIPRILRSPPP-THPLIEDVV 384
+HQ + P + W G++ + NH LL ++ S PP +P I+D++
Sbjct: 91 MHQTLQDPSYAQQSNHWDNGYQDFV-NLGPNHTTPDLLSLLQLPRSSLPPFANPSIQDII 149
Query: 383 MATNQAIIHY 354
M T+ ++ Y
Sbjct: 150 MTTSSSVAAY 159
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,153,256
Number of Sequences: 28952
Number of extensions: 318893
Number of successful extensions: 931
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 711
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 931
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1853336000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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