Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_B22
         (866 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0506 + 8992893-8993669                                           30   2.1  
01_06_0581 - 30386018-30386440                                         29   4.8  

>03_02_0506 + 8992893-8993669
          Length = 258

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 14/39 (35%), Positives = 17/39 (43%)
 Frame = +3

Query: 369 APXPHSTPXLHTXGRRPHARXPGXAXPPRPXGSXTRHLP 485
           +P P       + GRRP  R PG    P+P    TR  P
Sbjct: 31  SPPPGGGSATGSAGRRPRGRPPGSKNKPKPPVVVTRESP 69


>01_06_0581 - 30386018-30386440
          Length = 140

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +2

Query: 275 SGVRSQVLERLEMRLRSGGGGARRQ 349
           SG+  +V +R+E   R GGGG RR+
Sbjct: 31  SGIEVKVRKRVEKEARMGGGGRRRR 55


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,554,171
Number of Sequences: 37544
Number of extensions: 205973
Number of successful extensions: 697
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 673
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 696
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2432722788
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)