Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_B21
         (823 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint compone...    29   0.60 
SPBC25B2.07c |mug164||microtubule-associated protein|Schizosacch...    29   1.1  
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa...    28   1.4  
SPAC5D6.02c |mug165||sequence orphan|Schizosaccharomyces pombe|c...    27   3.2  
SPAC890.05 |||ribosome biogenesis protein|Schizosaccharomyces po...    27   4.3  
SPBC1347.10 |cdc23|mcm10|MCM-associated protein Mcm10|Schizosacc...    26   7.4  
SPBC11B10.05c |rsp1||random septum position protein Rsp1|Schizos...    25   9.8  

>SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint component
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 809

 Score = 29.5 bits (63), Expect = 0.60
 Identities = 18/48 (37%), Positives = 26/48 (54%)
 Frame = -2

Query: 609 KVRAKKSKDSPVPRKRRKVDAPEANERQLRSRGKRSTPATPVVEKPRK 466
           K   KKSK  P  ++  KV  P +N + ++   K   P++PVV  PRK
Sbjct: 508 KAPTKKSKVKPSKQEESKVVVP-SNAKAVK---KSVVPSSPVVPSPRK 551


>SPBC25B2.07c |mug164||microtubule-associated
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 501

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 24/67 (35%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
 Frame = -2

Query: 681 RSKLDXYIYIESHKGLDGTQVAFPKVRAK-KSKDSPVPRKRRKVDAPEANER-QLRSRGK 508
           R+K    +   S  G +G  V  PKV    KS DSPV +     D P A+ R  +RS G 
Sbjct: 175 RAKSSMAVRSPSRLG-NGPNVRSPKVGFNAKSDDSPVVKSPGSNDKPSASPRISVRSLGN 233

Query: 507 RSTPATP 487
            S    P
Sbjct: 234 SSVVRPP 240


>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1628

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = -2

Query: 645  HKGLDGTQVAFPKVRAKKSKDSPVPRKRRKVDAPEANERQLRSR 514
            +K L   +    +V A+ S +     +RR+   PE N R LR+R
Sbjct: 1362 NKNLVENKAVEKRVEARSSANERKQEERRRKTTPEGNRRALRTR 1405


>SPAC5D6.02c |mug165||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 300

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 4/38 (10%)
 Frame = -2

Query: 606 VRAKKSKDSP-VP---RKRRKVDAPEANERQLRSRGKR 505
           + + +S DS  +P   RKRRKV  PE  +  LR RG++
Sbjct: 64  IASSQSNDSAAIPSYRRKRRKVRKPEIVKPTLRKRGRK 101


>SPAC890.05 |||ribosome biogenesis protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 284

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
 Frame = -2

Query: 609 KVRAKKSKDSPVPRKRRKVDAPEANERQLRSRGKRSTP-ATPVVEKPRKGRR 457
           K +  K KD     K+RK  + +  E++ +    +  P +T  VEK ++G R
Sbjct: 199 KKKEHKKKDKESSSKKRKSGSSDKEEKKKKKIKLKDKPESTSSVEKVKEGNR 250


>SPBC1347.10 |cdc23|mcm10|MCM-associated protein
           Mcm10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 593

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 13/50 (26%), Positives = 28/50 (56%)
 Frame = -1

Query: 346 RATRQASERKTIKAKKKETLTLNQQEDQMRMTRSRKRRLEVSXSPSEVKS 197
           R   +  E+K +++ +KE  + N +  Q+  +  ++ R+    SPS++KS
Sbjct: 21  RQLNEIQEKKRLRSAQKEASSENAEVIQVPRSPPQQVRVLTVSSPSKLKS 70


>SPBC11B10.05c |rsp1||random septum position protein
           Rsp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 494

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 15/64 (23%), Positives = 28/64 (43%)
 Frame = -1

Query: 379 KPVLREKGQNGRATRQASERKTIKAKKKETLTLNQQEDQMRMTRSRKRRLEVSXSPSEVK 200
           KP+ R K  +    +  S+   + A+   T    + +DQ+   +S  R L +     EV 
Sbjct: 319 KPLSRSKSSSLSRNQTRSQLNDLSAENDSTSNSTEYDDQL---QSILRSLAIEGDDDEVA 375

Query: 199 SIVP 188
            ++P
Sbjct: 376 KVLP 379


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,449,894
Number of Sequences: 5004
Number of extensions: 41344
Number of successful extensions: 146
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 402440190
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)