Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_T7_B20
(805 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0232 + 21130122-21130454,21130895-21131053,21131424-211315... 33 0.35
06_03_1055 - 27234824-27234838,27236087-27236125,27236322-272373... 30 2.5
07_03_0846 - 21983581-21986055 29 3.3
05_04_0396 - 20934444-20934969,20935042-20935316,20935447-20935581 29 3.3
03_05_0951 + 29093962-29094373,29095291-29095388,29095689-290960... 29 4.3
03_05_0183 - 21681673-21682524 29 4.3
01_07_0197 + 41912207-41912652,41913226-41913800,41913828-419157... 29 4.3
01_06_0695 - 31292622-31293317 29 4.3
08_02_1081 + 24215323-24215335,24215450-24215572,24216241-242164... 29 5.7
07_03_1086 + 23858419-23859423,23859527-23859610 29 5.7
01_01_1235 - 10017728-10017766,10018891-10019352 29 5.7
11_07_0014 + 27379941-27379974,27381975-27382033,27382561-273827... 28 7.6
09_02_0267 - 6485428-6485895,6488255-6488303,6488466-6488469,648... 28 7.6
03_02_0554 - 9426195-9426674,9427163-9427252,9428143-9428934 28 10.0
01_06_0723 + 31501900-31502808,31502846-31503295 28 10.0
>02_04_0232 +
21130122-21130454,21130895-21131053,21131424-21131582,
21132420-21132512,21133321-21133437,21133623-21133697,
21133878-21134104,21134200-21135073
Length = 678
Score = 32.7 bits (71), Expect = 0.35
Identities = 17/43 (39%), Positives = 20/43 (46%)
Frame = +3
Query: 69 PSTTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSID 197
PS TP ER S+D PR Y R+RD K+ S D
Sbjct: 365 PSDTPHLERSQSSDRRRPRSSDPRYTPSRTRDEDAHKQHSSRD 407
>06_03_1055 -
27234824-27234838,27236087-27236125,27236322-27237388,
27237422-27237630,27237650-27238053
Length = 577
Score = 29.9 bits (64), Expect = 2.5
Identities = 16/45 (35%), Positives = 27/45 (60%)
Frame = -1
Query: 337 ASLAESGKDMLTVEPRESGGSKQCDSTSRVSHSKRETRRRSPFGS 203
A+ A +GK + E E S+QCD T + +S RE ++R+P+ +
Sbjct: 430 AAAAAAGKPISEHEAIEHLWSRQCDLTEILQNSSRE-KKRNPYAA 473
>07_03_0846 - 21983581-21986055
Length = 824
Score = 29.5 bits (63), Expect = 3.3
Identities = 19/50 (38%), Positives = 26/50 (52%)
Frame = +3
Query: 195 DLRDPNGLRRRVSRFECETRLVESHCLEPPDSRGSTVSISLPDSARLASA 344
DL+D G +R +C+T S PD S VS+ LPD+A+ A A
Sbjct: 326 DLQDFTGGCKRNVPLQCQTN--SSSAQTQPDKFYSMVSVRLPDNAQSAVA 373
>05_04_0396 - 20934444-20934969,20935042-20935316,20935447-20935581
Length = 311
Score = 29.5 bits (63), Expect = 3.3
Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = -1
Query: 424 GHLVHALGR-AAGGAKLPSAGLCLNASKAEASLA 326
G LV L R GG SAG+C S+ +ASLA
Sbjct: 203 GRLVETLARDGGGGGGAYSAGVCFYGSRMDASLA 236
>03_05_0951 +
29093962-29094373,29095291-29095388,29095689-29096087,
29096999-29097724,29097802-29097968,29098046-29098311,
29098396-29098581,29099072-29099346,29099435-29099683
Length = 925
Score = 29.1 bits (62), Expect = 4.3
Identities = 23/65 (35%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Frame = -1
Query: 346 KAEASLAESGKDMLTVEP-RESGGSKQCDSTSRVSHSKRETR-RRSPFGSRRSMLSVFFL 173
K+ AS A G D P R GG K+ S + SKR + R + F +L L
Sbjct: 4 KSSASAAHQGGDAPAEAPRRRGGGGKRKSGGSSFTPSKRHAKERNAAFHVPPHLLHSGPL 63
Query: 172 TRASR 158
TRA+R
Sbjct: 64 TRAAR 68
>03_05_0183 - 21681673-21682524
Length = 283
Score = 29.1 bits (62), Expect = 4.3
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = -2
Query: 636 SQAFIATLLFDPSMSALPIIAKQNSPS 556
SQAF A LL D + +A+P++ Q P+
Sbjct: 229 SQAFSAVLLADANRAAIPVVVVQKRPA 255
>01_07_0197 +
41912207-41912652,41913226-41913800,41913828-41915748,
41915836-41916049,41916143-41916394,41916469-41916528,
41916646-41916776,41916898-41917012,41917084-41917239
Length = 1289
Score = 29.1 bits (62), Expect = 4.3
Identities = 18/37 (48%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = -1
Query: 697 YKEFLARG-ARKVTTGITGLWQPSVHSDVAF*SFDVG 590
YK F A G RKV GIT + PS+ D+AF S +G
Sbjct: 633 YKIFQAFGLVRKVEKGITRWYYPSMLDDLAFDSAALG 669
>01_06_0695 - 31292622-31293317
Length = 231
Score = 29.1 bits (62), Expect = 4.3
Identities = 16/47 (34%), Positives = 19/47 (40%)
Frame = +3
Query: 15 LSPGAGLSLNRSQHDAALPSTTPRQERKSSTDYSEPRHRTELYPDLR 155
+ P L Q D PS++ SST S P HR L P R
Sbjct: 1 MEPSTKQLLPMPQQDPNSPSSSTSSSSSSSTSPSHPHHRAPLPPSPR 47
>08_02_1081 +
24215323-24215335,24215450-24215572,24216241-24216489,
24218517-24218720,24218864-24218993,24219610-24219679,
24219766-24219900,24219996-24220209,24220314-24220455,
24220630-24220851,24220997-24221195
Length = 566
Score = 28.7 bits (61), Expect = 5.7
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = -1
Query: 286 SGGSKQCDSTSRVSHSKRETRRRSPFGSRRSML 188
S G+ Q +T R HS E RRRS R +L
Sbjct: 212 SAGTDQMPNTPRSKHSATEQRRRSKINDRFQLL 244
>07_03_1086 + 23858419-23859423,23859527-23859610
Length = 362
Score = 28.7 bits (61), Expect = 5.7
Identities = 25/76 (32%), Positives = 32/76 (42%), Gaps = 5/76 (6%)
Frame = -1
Query: 484 LLMACRCDSNTAQYERNRSFGHLVHALGRAAGGAKLPSAGLCLNA-----SKAEASLAES 320
LL CD N A + LVHAL AA A +A L A AS+ +
Sbjct: 129 LLNLSICDENKAIIVEAGAIRPLVHALKSAASPAARENAACALLRLSQLDGSAAASIGRA 188
Query: 319 GKDMLTVEPRESGGSK 272
G L V E+GG++
Sbjct: 189 GAIPLLVSLLETGGAR 204
>01_01_1235 - 10017728-10017766,10018891-10019352
Length = 166
Score = 28.7 bits (61), Expect = 5.7
Identities = 24/75 (32%), Positives = 34/75 (45%), Gaps = 5/75 (6%)
Frame = -1
Query: 403 GRAAGGAKLPSAGLCLNASKAEASLAESGKDM--LTVEPR---ESGGSKQCDSTSRVSHS 239
G GGA + + L+A+ L G + L + PR S + +TS + S
Sbjct: 66 GEDGGGAGVRACSSDLSAAAFADELFREGALLRPLKLPPRLQTPSASAAASAATSPTAAS 125
Query: 238 KRETRRRSPFGSRRS 194
K + RSPF SRRS
Sbjct: 126 KAASSSRSPFASRRS 140
>11_07_0014 +
27379941-27379974,27381975-27382033,27382561-27382782,
27383727-27383810,27385054-27385131,27385716-27385832,
27385956-27386019,27386399-27386402,27386565-27386613,
27388973-27389440
Length = 392
Score = 28.3 bits (60), Expect = 7.6
Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Frame = +3
Query: 162 DARVKKKTDSIDLRDPNGLRRRVSRFE-CETRLVESHCLEPPDSRGSTVSISLPDSARLA 338
D KKK S + N R+RV+ FE +R E L S +T +LPD+ L
Sbjct: 253 DGEPKKKPTSTPSQKRNNKRKRVTAFERLWSRAGELRILRAMASHTNTHRSTLPDTCDLF 312
Query: 339 SAL 347
+ L
Sbjct: 313 ATL 315
>09_02_0267 -
6485428-6485895,6488255-6488303,6488466-6488469,
6488849-6488912,6489036-6489152,6489737-6489814,
6491058-6491141,6492086-6492307,6492835-6492893,
6494894-6494927
Length = 392
Score = 28.3 bits (60), Expect = 7.6
Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Frame = +3
Query: 162 DARVKKKTDSIDLRDPNGLRRRVSRFE-CETRLVESHCLEPPDSRGSTVSISLPDSARLA 338
D KKK S + N R+RV+ FE +R E L S +T +LPD+ L
Sbjct: 253 DGEPKKKPTSTPSQKRNNKRKRVTAFERLWSRAGELRILRAMASHTNTHRSTLPDTCDLF 312
Query: 339 SAL 347
+ L
Sbjct: 313 ATL 315
>03_02_0554 - 9426195-9426674,9427163-9427252,9428143-9428934
Length = 453
Score = 27.9 bits (59), Expect = 10.0
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = -1
Query: 805 AAQRDRTXA*AKGKSWLDPDV 743
AA RDR A A+G+ W DP V
Sbjct: 107 AAYRDRIVAVAEGRPWTDPPV 127
>01_06_0723 + 31501900-31502808,31502846-31503295
Length = 452
Score = 27.9 bits (59), Expect = 10.0
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = +3
Query: 15 LSPGAGLSLNRSQHDAALPSTTPRQERKS-STDYSEP 122
L PG L + DAA +TT +++R++ DYS P
Sbjct: 91 LLPGRALGFFHKEQDAAAVATTRKRKRRAIIVDYSTP 127
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,932,781
Number of Sequences: 37544
Number of extensions: 500245
Number of successful extensions: 1446
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1405
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1445
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2185924824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -