Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_B19
         (804 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     26   0.40 
EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    22   6.6  
L01617-1|AAA30097.1|   46|Tribolium castaneum zinc finger protei...    21   8.7  
EU019709-1|ABU25221.1|  540|Tribolium castaneum aspartate 1-deca...    21   8.7  
AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle pr...    21   8.7  

>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 25.8 bits (54), Expect = 0.40
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +1

Query: 718 FTXVLEWYHXLSLDFHKC 771
           +T +LEWYH LS   + C
Sbjct: 59  YTFLLEWYHTLSKACYDC 76


>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = -1

Query: 351 TDGRFPPLW 325
           T+GR PP+W
Sbjct: 216 TEGRLPPVW 224


>L01617-1|AAA30097.1|   46|Tribolium castaneum zinc finger protein
           protein.
          Length = 46

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = -1

Query: 690 TYPCRFCVCPK 658
           T PC+  +CPK
Sbjct: 5   TLPCKCTICPK 15


>EU019709-1|ABU25221.1|  540|Tribolium castaneum aspartate
           1-decarboxylase protein.
          Length = 540

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 10/29 (34%), Positives = 13/29 (44%)
 Frame = +1

Query: 688 GFSRMFXWPHFTXVLEWYHXLSLDFHKCE 774
           GF  +   P +T +  WY   SL   K E
Sbjct: 446 GFEMVIAEPEYTNICFWYVPKSLRGRKDE 474


>AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle
           protein.
          Length = 361

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 7/14 (50%), Positives = 8/14 (57%)
 Frame = -1

Query: 126 YTQEGSYSRRSCGY 85
           Y Q  +Y   SCGY
Sbjct: 338 YDQSSAYDASSCGY 351


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 189,995
Number of Sequences: 336
Number of extensions: 4086
Number of successful extensions: 12
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21895259
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)