Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_B19
         (804 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein L3|Sch...   140   3e-34
SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3 |Schiz...   140   3e-34
SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr...    27   4.1  
SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces po...    26   5.5  
SPBC83.19c |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   5.5  
SPAC630.15 |mug177||sequence orphan|Schizosaccharomyces pombe|ch...    25   9.5  

>SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein
           L3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score =  140 bits (338), Expect = 3e-34
 Identities = 63/94 (67%), Positives = 75/94 (79%)
 Frame = -2

Query: 392 NASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALE 213
           NAST++D +EK ITPMGGF  YG V NDFVM+ G   GP KR++TLRKSL  HT R ALE
Sbjct: 293 NASTDFDATEKRITPMGGFVRYGVVENDFVMLNGATPGPVKRVLTLRKSLLTHTSRKALE 352

Query: 212 KINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKD 111
            ++LK+IDT+SKFGHGRFQTPA+   F+GTLKKD
Sbjct: 353 PVSLKWIDTASKFGHGRFQTPAEAKQFLGTLKKD 386



 Score =  111 bits (266), Expect = 1e-25
 Identities = 47/71 (66%), Positives = 57/71 (80%)
 Frame = -1

Query: 627 KGKGYKGVTSRWHTKKLPRKTHKXLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKK 448
           +GKG +G T+RW TK+LPRKTH+ LRKVACIGAWHP+ V +TVARAG  GY HRT++N K
Sbjct: 222 RGKGNEGTTARWGTKRLPRKTHRGLRKVACIGAWHPANVQWTVARAGNAGYMHRTQLNSK 281

Query: 447 IYRIGPRNPQK 415
           IYRIG  +  K
Sbjct: 282 IYRIGAGDDAK 292


>SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score =  140 bits (338), Expect = 3e-34
 Identities = 63/94 (67%), Positives = 75/94 (79%)
 Frame = -2

Query: 392 NASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALE 213
           NAST++D +EK ITPMGGF  YG V NDFVM+ G   GP KR++TLRKSL  HT R ALE
Sbjct: 293 NASTDFDATEKRITPMGGFVRYGVVENDFVMLNGATPGPVKRVLTLRKSLLTHTSRKALE 352

Query: 212 KINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKD 111
            ++LK+IDT+SKFGHGRFQTPA+   F+GTLKKD
Sbjct: 353 PVSLKWIDTASKFGHGRFQTPAEAKQFLGTLKKD 386



 Score =  111 bits (266), Expect = 1e-25
 Identities = 47/71 (66%), Positives = 57/71 (80%)
 Frame = -1

Query: 627 KGKGYKGVTSRWHTKKLPRKTHKXLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKK 448
           +GKG +G T+RW TK+LPRKTH+ LRKVACIGAWHP+ V +TVARAG  GY HRT++N K
Sbjct: 222 RGKGNEGTTARWGTKRLPRKTHRGLRKVACIGAWHPANVQWTVARAGNAGYMHRTQLNSK 281

Query: 447 IYRIGPRNPQK 415
           IYRIG  +  K
Sbjct: 282 IYRIGAGDDAK 292


>SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 511

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -1

Query: 132 HGYTQEGSYSRRSCGYHNPS 73
           HGY+   +  R+ C YHNPS
Sbjct: 307 HGYSMY-ALERKMCNYHNPS 325


>SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 665

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -1

Query: 633 SPKGKGYKGVTSRWHTKKLPRKTHK 559
           +PK K + G T  WH+   PR T K
Sbjct: 412 TPKSK-HAGSTQEWHSHTTPRSTSK 435


>SPBC83.19c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 119

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = -3

Query: 472 SPY*NEQENLSYWTKESTKRMAKSLKTMHLLSMICLRNPLHRWEVSP 332
           SP+    + L+Y   E  +   K +     +  + LRNPL R++VSP
Sbjct: 63  SPFCCFTDTLAYLRCEPYRGYRKCIYRKVKMPNLILRNPLVRYDVSP 109


>SPAC630.15 |mug177||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 105

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +3

Query: 528 KLQCRQLS*XPCVSYGVASLCANEK*HLCILCPWV 632
           +L  RQLS    V+ G+  LC  +   +C+  P V
Sbjct: 67  RLNDRQLSCVESVTNGIGLLCLKQADQVCLFTPTV 101


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,312,213
Number of Sequences: 5004
Number of extensions: 69639
Number of successful extensions: 194
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 194
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 390427050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)