Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_T7_B19
(804 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_14332| Best HMM Match : Ribosomal_L3 (HMM E-Value=8.6e-34) 140 2e-33
SB_51931| Best HMM Match : Ribosomal_L3 (HMM E-Value=0) 129 3e-30
SB_7140| Best HMM Match : No HMM Matches (HMM E-Value=.) 62 4e-10
SB_57037| Best HMM Match : RVT_1 (HMM E-Value=3.4e-15) 31 1.1
SB_56220| Best HMM Match : RVT_1 (HMM E-Value=3.7e-16) 31 1.1
SB_37487| Best HMM Match : RVT_1 (HMM E-Value=0.03) 31 1.1
SB_33284| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.1
SB_30332| Best HMM Match : RVT_1 (HMM E-Value=2.7e-34) 31 1.1
SB_28979| Best HMM Match : RVT_1 (HMM E-Value=1.6e-40) 31 1.1
SB_26992| Best HMM Match : rve (HMM E-Value=6.3e-36) 31 1.1
SB_51232| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.1
SB_23276| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.1
SB_11067| Best HMM Match : RVT_1 (HMM E-Value=0) 31 1.1
SB_34116| Best HMM Match : RVT_1 (HMM E-Value=0) 31 1.4
SB_51282| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.3
SB_4606| Best HMM Match : HlyIII (HMM E-Value=0.002) 29 3.3
SB_6540| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.8
SB_26123| Best HMM Match : NHL (HMM E-Value=3.5e-08) 28 7.7
>SB_14332| Best HMM Match : Ribosomal_L3 (HMM E-Value=8.6e-34)
Length = 347
Score = 140 bits (338), Expect = 2e-33
Identities = 62/82 (75%), Positives = 70/82 (85%)
Frame = -2
Query: 344 GGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHG 165
GGFPHYG+VN DF+M+KGC +GPKKR++TLRKSL VHT R A EKI LKFIDTSSKFGHG
Sbjct: 215 GGFPHYGQVNEDFLMVKGCVVGPKKRVLTLRKSLLVHTSRDAAEKITLKFIDTSSKFGHG 274
Query: 164 RFQTPADKAAFMGTLKKDRIRE 99
RFQ PA+K AFMG LK DR +E
Sbjct: 275 RFQHPAEKRAFMGMLKSDREKE 296
>SB_51931| Best HMM Match : Ribosomal_L3 (HMM E-Value=0)
Length = 338
Score = 129 bits (311), Expect = 3e-30
Identities = 56/65 (86%), Positives = 60/65 (92%)
Frame = -1
Query: 627 KGKGYKGVTSRWHTKKLPRKTHKXLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKK 448
KG G+KGVT RW TKKLPRKTHK LRKVACIGAWHP+RVSF+VARAGQ GYHHRTE+NKK
Sbjct: 224 KGHGFKGVTYRWGTKKLPRKTHKGLRKVACIGAWHPARVSFSVARAGQAGYHHRTELNKK 283
Query: 447 IYRIG 433
IYRIG
Sbjct: 284 IYRIG 288
Score = 60.9 bits (141), Expect = 1e-09
Identities = 27/36 (75%), Positives = 32/36 (88%)
Frame = -2
Query: 452 RKSIVLDQGIHKKDGKVIKNNASTEYDLSEKSITPM 345
+K + QGIHKKDGKVIKNNASTEYDL++KSI+PM
Sbjct: 282 KKIYRIGQGIHKKDGKVIKNNASTEYDLTDKSISPM 317
>SB_7140| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 58
Score = 62.5 bits (145), Expect = 4e-10
Identities = 28/36 (77%), Positives = 32/36 (88%)
Frame = -2
Query: 452 RKSIVLDQGIHKKDGKVIKNNASTEYDLSEKSITPM 345
+K + QGIHKKDGKVIKNNASTEYDL++KSITPM
Sbjct: 11 KKIYRIGQGIHKKDGKVIKNNASTEYDLTDKSITPM 46
Score = 39.5 bits (88), Expect = 0.003
Identities = 15/16 (93%), Positives = 16/16 (100%)
Frame = -1
Query: 480 GYHHRTEMNKKIYRIG 433
GYHHRTE+NKKIYRIG
Sbjct: 2 GYHHRTELNKKIYRIG 17
>SB_57037| Best HMM Match : RVT_1 (HMM E-Value=3.4e-15)
Length = 291
Score = 31.1 bits (67), Expect = 1.1
Identities = 17/43 (39%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
Frame = -3
Query: 460 NEQENLSYWTKESTKRMAKSLKTMHLLSMICLRNP-LHRWEVS 335
++ +NLS W+ T +MA ++ HLLS+ RNP LH +E++
Sbjct: 166 HDLDNLSDWS--DTWQMAFNVSKCHLLSVTNKRNPSLHEYEIN 206
>SB_56220| Best HMM Match : RVT_1 (HMM E-Value=3.7e-16)
Length = 453
Score = 31.1 bits (67), Expect = 1.1
Identities = 17/43 (39%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
Frame = -3
Query: 460 NEQENLSYWTKESTKRMAKSLKTMHLLSMICLRNP-LHRWEVS 335
++ +NLS W+ T +MA ++ HLLS+ RNP LH +E++
Sbjct: 197 HDLDNLSDWS--DTWQMAFNVSKCHLLSVTNKRNPSLHEYEIN 237
>SB_37487| Best HMM Match : RVT_1 (HMM E-Value=0.03)
Length = 347
Score = 31.1 bits (67), Expect = 1.1
Identities = 17/43 (39%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
Frame = -3
Query: 460 NEQENLSYWTKESTKRMAKSLKTMHLLSMICLRNP-LHRWEVS 335
++ +NLS W+ T +MA ++ HLLS+ RNP LH +E++
Sbjct: 268 HDLDNLSDWS--DTWQMAFNVSKCHLLSVTNKRNPSLHEYEIN 308
>SB_33284| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 263
Score = 31.1 bits (67), Expect = 1.1
Identities = 17/43 (39%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
Frame = -3
Query: 460 NEQENLSYWTKESTKRMAKSLKTMHLLSMICLRNP-LHRWEVS 335
++ +NLS W+ T +MA ++ HLLS+ RNP LH +E++
Sbjct: 52 HDLDNLSDWS--DTWQMAFNVSKCHLLSVTNKRNPSLHEYEIN 92
>SB_30332| Best HMM Match : RVT_1 (HMM E-Value=2.7e-34)
Length = 1683
Score = 31.1 bits (67), Expect = 1.1
Identities = 17/43 (39%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
Frame = -3
Query: 460 NEQENLSYWTKESTKRMAKSLKTMHLLSMICLRNP-LHRWEVS 335
++ +NLS W+ T +MA ++ HLLS+ RNP LH +E++
Sbjct: 1084 HDLDNLSDWS--DTWQMAFNVSKCHLLSVTNKRNPSLHEYEIN 1124
Score = 31.1 bits (67), Expect = 1.1
Identities = 17/43 (39%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
Frame = -3
Query: 460 NEQENLSYWTKESTKRMAKSLKTMHLLSMICLRNP-LHRWEVS 335
++ +NLS W+ T +MA ++ HLLS+ RNP LH +E++
Sbjct: 1276 HDLDNLSDWS--DTWQMAFNVSKCHLLSVTNKRNPSLHEYEIN 1316
>SB_28979| Best HMM Match : RVT_1 (HMM E-Value=1.6e-40)
Length = 892
Score = 31.1 bits (67), Expect = 1.1
Identities = 17/43 (39%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
Frame = -3
Query: 460 NEQENLSYWTKESTKRMAKSLKTMHLLSMICLRNP-LHRWEVS 335
++ +NLS W+ T +MA ++ HLLS+ RNP LH +E++
Sbjct: 636 HDLDNLSDWS--DTWQMAFNVSKCHLLSVTNKRNPSLHEYEIN 676
>SB_26992| Best HMM Match : rve (HMM E-Value=6.3e-36)
Length = 1022
Score = 31.1 bits (67), Expect = 1.1
Identities = 17/43 (39%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
Frame = -3
Query: 460 NEQENLSYWTKESTKRMAKSLKTMHLLSMICLRNP-LHRWEVS 335
++ +NLS W+ T +MA ++ HLLS+ RNP LH +E++
Sbjct: 825 HDLDNLSDWS--DTWQMAFNVSKCHLLSVTNKRNPSLHEYEIN 865
>SB_51232| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1676
Score = 31.1 bits (67), Expect = 1.1
Identities = 17/43 (39%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
Frame = -3
Query: 460 NEQENLSYWTKESTKRMAKSLKTMHLLSMICLRNP-LHRWEVS 335
++ +NLS W+ T +MA ++ HLLS+ RNP LH +E++
Sbjct: 888 HDLDNLSDWS--DTWQMAFNVSKCHLLSVTNKRNPSLHEYEIN 928
>SB_23276| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 193
Score = 31.1 bits (67), Expect = 1.1
Identities = 17/43 (39%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
Frame = -3
Query: 460 NEQENLSYWTKESTKRMAKSLKTMHLLSMICLRNP-LHRWEVS 335
++ +NLS W+ T +MA ++ HLLS+ RNP LH +E++
Sbjct: 68 HDLDNLSDWS--DTWQMAFNVSKCHLLSVTNKRNPSLHEYEIN 108
>SB_11067| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 1176
Score = 31.1 bits (67), Expect = 1.1
Identities = 17/43 (39%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
Frame = -3
Query: 460 NEQENLSYWTKESTKRMAKSLKTMHLLSMICLRNP-LHRWEVS 335
++ +NLS W+ T +MA ++ HLLS+ RNP LH +E++
Sbjct: 972 HDLDNLSDWS--DTWQMAFNVSKCHLLSVTNKRNPSLHEYEIN 1012
>SB_34116| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 522
Score = 30.7 bits (66), Expect = 1.4
Identities = 17/40 (42%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Frame = -3
Query: 451 ENLSYWTKESTKRMAKSLKTMHLLSMICLRNP-LHRWEVS 335
+NLS W+ T +MA ++ HLLS+ RNP LH +E++
Sbjct: 269 DNLSDWS--DTWQMAFNVSKCHLLSVANKRNPSLHEYEIN 306
>SB_51282| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 217
Score = 29.5 bits (63), Expect = 3.3
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = -2
Query: 419 KKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIK 294
KK V +N+ T D + + GFPHY + +D + IK
Sbjct: 44 KKCWTVTQNDVPTPLDCGLSAWRILSGFPHYKLIEDDHIEIK 85
>SB_4606| Best HMM Match : HlyIII (HMM E-Value=0.002)
Length = 458
Score = 29.5 bits (63), Expect = 3.3
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +3
Query: 30 NVYFHGLHLRLRSSRWGCGSRSFFANTILLE 122
N+Y HG+ L LR +GCGS +L++
Sbjct: 368 NIYSHGVRLFLRYLGYGCGSDGALPYCVLMD 398
>SB_6540| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 366
Score = 28.7 bits (61), Expect = 5.8
Identities = 14/50 (28%), Positives = 24/50 (48%)
Frame = -2
Query: 275 KKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMG 126
K R++ +K ++H+ + K ++F+ SKF H T A A G
Sbjct: 317 KDRLLEWKKERQIHSFSSTTLKARIRFVAAMSKFAHTTEDTTAWDEATKG 366
>SB_26123| Best HMM Match : NHL (HMM E-Value=3.5e-08)
Length = 545
Score = 28.3 bits (60), Expect = 7.7
Identities = 14/42 (33%), Positives = 18/42 (42%)
Frame = -1
Query: 162 IPDAG*QGCIHGYTQEGSYSRRSCGYHNPSGCCAALSVVREN 37
I D G CIH +T +G Y C + + G REN
Sbjct: 410 ISDDG-ANCIHVFTLDGQYVSNECSWESHEGYTHIAVTAREN 450
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,357,155
Number of Sequences: 59808
Number of extensions: 553219
Number of successful extensions: 1171
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1171
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2227723674
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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