Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_B19
         (804 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g43170.2 68414.m04975 60S ribosomal protein L3 (RPL3A) identi...   135   4e-32
At1g43170.1 68414.m04974 60S ribosomal protein L3 (RPL3A) identi...   135   4e-32
At1g61580.1 68414.m06939 60S ribosomal protein L3 (RPL3B) identi...   131   5e-31
At5g44770.1 68418.m05487 DC1 domain-containing protein contains ...    29   3.6  
At3g12280.1 68416.m01533 retinoblastoma-related protein (RBR1) n...    29   3.6  
At5g22400.1 68418.m02613 rac GTPase activating protein, putative...    28   8.3  
At3g45510.1 68416.m04914 zinc finger (C3HC4-type RING finger) fa...    28   8.3  
At1g71400.1 68414.m08246 disease resistance family protein / LRR...    28   8.3  
At1g66920.1 68414.m07605 serine/threonine protein kinase, putati...    28   8.3  

>At1g43170.2 68414.m04975 60S ribosomal protein L3 (RPL3A) identical
           to ribosomal protein GI:166858 from [Arabidopsis
           thaliana]
          Length = 389

 Score =  135 bits (326), Expect = 4e-32
 Identities = 59/94 (62%), Positives = 73/94 (77%)
 Frame = -2

Query: 395 NNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAAL 216
           + A TEYD +EK +TPMGGFPHYG V +D++MIKGCC+GPKKR++TLR+SL   T R AL
Sbjct: 296 HTAMTEYDRTEKDVTPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLTQTSRLAL 355

Query: 215 EKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKK 114
           E+I LKFIDT+S FGHGRFQT  +K  F   + K
Sbjct: 356 EEIKLKFIDTASIFGHGRFQTSLEKMRFYNRVTK 389



 Score =  124 bits (298), Expect = 9e-29
 Identities = 51/65 (78%), Positives = 59/65 (90%)
 Frame = -1

Query: 627 KGKGYKGVTSRWHTKKLPRKTHKXLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKK 448
           KGKGY+GV +RW   +LPRKTH+ LRKVACIGAWHP+RVS+TVARAGQ GYHHRTE+NKK
Sbjct: 225 KGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTELNKK 284

Query: 447 IYRIG 433
           IYR+G
Sbjct: 285 IYRLG 289



 Score = 27.9 bits (59), Expect = 8.3
 Identities = 19/55 (34%), Positives = 31/55 (56%)
 Frame = -3

Query: 784 KRRAHIYGNPNLTGGTIRGXK*NGAKXTFWRNLSLSILCLPXDEMIDCIGVTQGQ 620
           +++AH+     + GGTI   K + A   F + + +  +    DEMID IGVT+G+
Sbjct: 176 QKKAHMM-EIQINGGTI-AQKVDFAYSFFEKQIPIEAV-FQKDEMIDIIGVTKGK 227


>At1g43170.1 68414.m04974 60S ribosomal protein L3 (RPL3A) identical
           to ribosomal protein GI:166858 from [Arabidopsis
           thaliana]
          Length = 389

 Score =  135 bits (326), Expect = 4e-32
 Identities = 59/94 (62%), Positives = 73/94 (77%)
 Frame = -2

Query: 395 NNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAAL 216
           + A TEYD +EK +TPMGGFPHYG V +D++MIKGCC+GPKKR++TLR+SL   T R AL
Sbjct: 296 HTAMTEYDRTEKDVTPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLTQTSRLAL 355

Query: 215 EKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKK 114
           E+I LKFIDT+S FGHGRFQT  +K  F   + K
Sbjct: 356 EEIKLKFIDTASIFGHGRFQTSLEKMRFYNRVTK 389



 Score =  124 bits (298), Expect = 9e-29
 Identities = 51/65 (78%), Positives = 59/65 (90%)
 Frame = -1

Query: 627 KGKGYKGVTSRWHTKKLPRKTHKXLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKK 448
           KGKGY+GV +RW   +LPRKTH+ LRKVACIGAWHP+RVS+TVARAGQ GYHHRTE+NKK
Sbjct: 225 KGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTELNKK 284

Query: 447 IYRIG 433
           IYR+G
Sbjct: 285 IYRLG 289



 Score = 27.9 bits (59), Expect = 8.3
 Identities = 19/55 (34%), Positives = 31/55 (56%)
 Frame = -3

Query: 784 KRRAHIYGNPNLTGGTIRGXK*NGAKXTFWRNLSLSILCLPXDEMIDCIGVTQGQ 620
           +++AH+     + GGTI   K + A   F + + +  +    DEMID IGVT+G+
Sbjct: 176 QKKAHMM-EIQINGGTI-AQKVDFAYSFFEKQIPIEAV-FQKDEMIDIIGVTKGK 227


>At1g61580.1 68414.m06939 60S ribosomal protein L3 (RPL3B) identical
           to ribosomal protein GI:806279 from [Arabidopsis
           thaliana]
          Length = 390

 Score =  131 bits (317), Expect = 5e-31
 Identities = 59/94 (62%), Positives = 74/94 (78%), Gaps = 1/94 (1%)
 Frame = -2

Query: 395 NNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAAL 216
           ++A TEYD +EK ITPMGGFPHYG V  D++MIKGCC+GPKKR++TLR++L   T R A+
Sbjct: 296 HSAMTEYDRTEKDITPMGGFPHYGIVKEDYLMIKGCCVGPKKRVVTLRQTLLKQTSRLAM 355

Query: 215 EKINLKFIDTSSKFGHGRFQTPADKAAFMG-TLK 117
           E+I LKFID +S  GHGRFQT  +KA F G T+K
Sbjct: 356 EEIKLKFIDAASNGGHGRFQTSQEKAKFYGRTIK 389



 Score =  125 bits (301), Expect = 4e-29
 Identities = 51/65 (78%), Positives = 59/65 (90%)
 Frame = -1

Query: 627 KGKGYKGVTSRWHTKKLPRKTHKXLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKK 448
           KGKGY+GV +RW   +LPRKTH+ LRKVACIGAWHP+RVS+TVARAGQ GYHHRTEMNKK
Sbjct: 225 KGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKK 284

Query: 447 IYRIG 433
           +YR+G
Sbjct: 285 VYRVG 289


>At5g44770.1 68418.m05487 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 541

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 24/85 (28%), Positives = 35/85 (41%), Gaps = 3/85 (3%)
 Frame = -2

Query: 356 ITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRK---SLRVHTKRAALEKINLKFIDT 186
           I P+   P Y  V  DF + KGC   P+K+   L     SLR H     ++K        
Sbjct: 286 ILPINDDPCYKCVECDFCLHKGCASLPRKKAHFLHNHKISLRAHKDDVYVDKCG-----A 340

Query: 185 SSKFGHGRFQTPADKAAFMGTLKKD 111
              + +G      DK++  G +K D
Sbjct: 341 CKTYSNGFKYECHDKSSCRGNIKYD 365


>At3g12280.1 68416.m01533 retinoblastoma-related protein (RBR1) nearly
            identical to retinoblastoma-related protein [Arabidopsis
            thaliana] GI:8777927; contains Pfam profiles: PF01858
            retinoblastoma-associated protein A domain, PF01857
            retinoblastoma-associated protein B domain
          Length = 1013

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 13/48 (27%), Positives = 25/48 (52%)
 Frame = +2

Query: 578  SFFVCQREVTPLYPLPLGDTNAVNHFIXGQTQNRQG*VSPECSLGPIS 721
            S++ C  E T  Y  P  D +A+N+ +   + NR+  ++ +   G +S
Sbjct: 928  SYYACVGESTHAYQSPSKDLSAINNRLNNSSSNRKRTLNFDAEAGMVS 975


>At5g22400.1 68418.m02613 rac GTPase activating protein, putative
           similar to rac GTPase activating protein 1 [Lotus
           japonicus] GI:3695059; contains Pfam profile PF00620:
           RhoGAP domain
          Length = 466

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 15/32 (46%), Positives = 20/32 (62%)
 Frame = -3

Query: 208 STSNSLTPRPSSVMVDSRRRLTRLHSWVHSRR 113
           S+S+S +P PSS+   SR   T L S  H+RR
Sbjct: 17  SSSSSSSPSPSSLSYASRSNATLLISSDHNRR 48


>At3g45510.1 68416.m04914 zinc finger (C3HC4-type RING finger)
           family protein contains a zinc finger, C3HC4 type (RING
           finger), signature, PROSITE:PS00518
          Length = 257

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 16/55 (29%), Positives = 25/55 (45%)
 Frame = -3

Query: 502 CSSCWSERLSSPY*NEQENLSYWTKESTKRMAKSLKTMHLLSMICLRNPLHRWEV 338
           CS C          +   NLS   KE   +  K+  T+ L  ++C+RNP+  W +
Sbjct: 179 CSKCRKPFCIDCNVSWHSNLS--CKEYKMKGNKATTTVWLYVLLCMRNPMEAWRL 231


>At1g71400.1 68414.m08246 disease resistance family protein / LRR
           family protein contains leucine rich-repeat domains
           Pfam:PF00560, INTERPRO:IPR001611; similar to Hcr2-5D
           [Lycopersicon esculentum] gi|3894393|gb|AAC78596
          Length = 847

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 12/29 (41%), Positives = 13/29 (44%)
 Frame = -1

Query: 624 GKGYKGVTSRWHTKKLPRKTHKXLRKVAC 538
           G  Y      W T+K  RK HK L  V C
Sbjct: 817 GHFYTSHNHEWFTEKFGRKQHKALTSVKC 845


>At1g66920.1 68414.m07605 serine/threonine protein kinase, putative
           similar to receptor serine/threonine kinase PR55K
           gi|1235680|gb|AAC49208; contains protein kinase domain,
           Pfam:PF00069; contains serine/threonine protein kinase
           domain, INTERPRO:IPR002290
          Length = 609

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +3

Query: 672 RIDRDRFLQNVXLAPFHFXPRMVPPVKF 755
           R+ R  FLQ++ L+PF F    +PP  F
Sbjct: 93  RVARTDFLQSICLSPFPFANATLPPEIF 120


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,535,191
Number of Sequences: 28952
Number of extensions: 376362
Number of successful extensions: 986
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 946
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 986
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1824072800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)