Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_T7_B17
(819 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q24325 Cluster: Transcription initiation factor TFIID s... 102 9e-21
UniRef50_UPI0000585F91 Cluster: PREDICTED: similar to cofactor o... 88 3e-16
UniRef50_Q6P1X5 Cluster: Transcription initiation factor TFIID s... 85 3e-15
UniRef50_Q4SUU4 Cluster: Chromosome undetermined SCAF13842, whol... 50 5e-05
UniRef50_Q9TYN3 Cluster: Taf (Tbp-associated transcription facto... 43 0.011
UniRef50_O97240 Cluster: AP endonuclease (DNA-(Apurinic or apyri... 36 0.93
UniRef50_A0UCG6 Cluster: Putative uncharacterized protein; n=1; ... 35 2.1
UniRef50_Q231J0 Cluster: Cyclic nucleotide-binding domain contai... 35 2.8
UniRef50_Q4RQQ9 Cluster: Chromosome 2 SCAF15004, whole genome sh... 34 3.8
UniRef50_Q3JR83 Cluster: Putative uncharacterized protein; n=4; ... 34 5.0
UniRef50_A2PZZ7 Cluster: GfV-D4-ORF1; n=4; Glypta fumiferanae ic... 33 6.6
UniRef50_A2DBJ3 Cluster: Putative uncharacterized protein; n=1; ... 33 6.6
UniRef50_UPI0000499A4C Cluster: diphthamide synthesis protein; n... 33 8.7
UniRef50_Q4ER48 Cluster: ABC transporter, substrate-binding prot... 33 8.7
UniRef50_A6LT11 Cluster: 6-phosphogluconate dehydrogenase, NAD-b... 33 8.7
UniRef50_Q0JHT2 Cluster: Os01g0844800 protein; n=6; Magnoliophyt... 33 8.7
>UniRef50_Q24325 Cluster: Transcription initiation factor TFIID
subunit 2; n=11; Eukaryota|Rep: Transcription initiation
factor TFIID subunit 2 - Drosophila melanogaster (Fruit
fly)
Length = 1221
Score = 102 bits (245), Expect = 9e-21
Identities = 52/108 (48%), Positives = 64/108 (59%)
Frame = -2
Query: 779 ECLVEFVPRGREARGTWRRYLXAVEERXPTPGVRHGLARLLVDTPPFERAQRHRLDSETV 600
ECLV+FV + R +L + E P P RH LA+LL+D PPF R R RLD +
Sbjct: 897 ECLVDFVKV--DGRSEDLEHLITLLETDPDPAARHALAQLLIDNPPFTRESRSRLDKPNL 954
Query: 599 VHRIWNNINSNLSNDARLRCDLVDLYYTLYGAKRPICCPLPEIQAMIK 456
V R+W +IN L D +LRCD+VDLYY LYG KRP C E Q+ K
Sbjct: 955 VDRLWFSIN-RLPYDTKLRCDIVDLYYALYGTKRPNCLQAGENQSFYK 1001
>UniRef50_UPI0000585F91 Cluster: PREDICTED: similar to cofactor of
initiator function; n=1; Strongylocentrotus
purpuratus|Rep: PREDICTED: similar to cofactor of
initiator function - Strongylocentrotus purpuratus
Length = 278
Score = 87.8 bits (208), Expect = 3e-16
Identities = 36/69 (52%), Positives = 50/69 (72%)
Frame = -2
Query: 680 RHGLARLLVDTPPFERAQRHRLDSETVVHRIWNNINSNLSNDARLRCDLVDLYYTLYGAK 501
RH L RLL+ PPF+ ++ +L +E +V R+W ++NS S+DARLRCD+VD ++ LYG
Sbjct: 6 RHKLLRLLIANPPFKYKEQSKLSTEELVERLWAHMNSGTSHDARLRCDVVDFFFALYGKT 65
Query: 500 RPICCPLPE 474
RP C PLPE
Sbjct: 66 RPSCLPLPE 74
>UniRef50_Q6P1X5 Cluster: Transcription initiation factor TFIID
subunit 2; n=29; Euteleostomi|Rep: Transcription
initiation factor TFIID subunit 2 - Homo sapiens (Human)
Length = 1199
Score = 84.6 bits (200), Expect = 3e-15
Identities = 37/95 (38%), Positives = 56/95 (58%)
Frame = -2
Query: 725 RYLXAVEERXPTPGVRHGLARLLVDTPPFERAQRHRLDSETVVHRIWNNINSNLSNDARL 546
++L + + P P VRH + +L PPF + L +E +V ++W +NS S+D RL
Sbjct: 908 QWLLNMIQNDPVPYVRHKILNMLTKNPPFTKNMESPLCNEALVDQLWKLMNSGTSHDWRL 967
Query: 545 RCDLVDLYYTLYGAKRPICCPLPEIQAMIKQNHQK 441
RC VDLY+TL+G RP C PLPE+ ++ +K
Sbjct: 968 RCGAVDLYFTLFGLSRPSCLPLPELGLVLNLKEKK 1002
>UniRef50_Q4SUU4 Cluster: Chromosome undetermined SCAF13842, whole
genome shotgun sequence; n=2; Tetraodontidae|Rep:
Chromosome undetermined SCAF13842, whole genome shotgun
sequence - Tetraodon nigroviridis (Green puffer)
Length = 1264
Score = 50.4 bits (115), Expect = 5e-05
Identities = 20/41 (48%), Positives = 28/41 (68%)
Frame = -2
Query: 563 SNDARLRCDLVDLYYTLYGAKRPICCPLPEIQAMIKQNHQK 441
S+D RLRCD V+LYY ++G RP C PLPE+ ++ +K
Sbjct: 997 SHDWRLRCDAVNLYYVMFGLTRPSCLPLPELGLVLNLKEKK 1037
Score = 37.1 bits (82), Expect = 0.53
Identities = 20/70 (28%), Positives = 37/70 (52%)
Frame = -2
Query: 779 ECLVEFVPRGREARGTWRRYLXAVEERXPTPGVRHGLARLLVDTPPFERAQRHRLDSETV 600
E LV++ R + ++L ++ + P+ VRH + +L PPF +A L +E +
Sbjct: 845 EALVDYTRVDRSSAEM--QWLLSLVQADPSHYVRHKILSMLCKNPPFTKAADSALCNEAL 902
Query: 599 VHRIWNNINS 570
V ++W +NS
Sbjct: 903 VDQLWKLMNS 912
>UniRef50_Q9TYN3 Cluster: Taf (Tbp-associated transcription factor)
family protein 2; n=2; Caenorhabditis|Rep: Taf
(Tbp-associated transcription factor) family protein 2 -
Caenorhabditis elegans
Length = 1086
Score = 42.7 bits (96), Expect = 0.011
Identities = 22/72 (30%), Positives = 35/72 (48%)
Frame = -2
Query: 689 PGVRHGLARLLVDTPPFERAQRHRLDSETVVHRIWNNINSNLSNDARLRCDLVDLYYTLY 510
P +R + RLL TPP + ++ R+W + +N S D+ +R +D+YY+LY
Sbjct: 966 PSIRRMIPRLLAQTPPTIFGSENAANTAETAERLW-KLCTNSSIDSCIRSGFLDVYYSLY 1024
Query: 509 GAKRPICCPLPE 474
P PE
Sbjct: 1025 ALGAPPALGGPE 1036
>UniRef50_O97240 Cluster: AP endonuclease (DNA-(Apurinic or
apyrimidinic site) lyase), putative; n=3;
Plasmodium|Rep: AP endonuclease (DNA-(Apurinic or
apyrimidinic site) lyase), putative - Plasmodium
falciparum (isolate 3D7)
Length = 617
Score = 36.3 bits (80), Expect = 0.93
Identities = 20/66 (30%), Positives = 43/66 (65%), Gaps = 1/66 (1%)
Frame = -2
Query: 374 SNLELKPVIKQEIDDVKYESTIGPMT-STALLDNKMDVTDENVLPVPLSSIKEEDVKIDV 198
S+ E K ++K+E+ + ++ + + +T++++NK N++PV ++KEE+ I+V
Sbjct: 104 SHKETKLMVKEEVPNSIVKNILNNNSCATSIINNKFYTQINNIIPVKPEAMKEEN--INV 161
Query: 197 TTVSTE 180
+TV+TE
Sbjct: 162 STVNTE 167
>UniRef50_A0UCG6 Cluster: Putative uncharacterized protein; n=1;
Burkholderia multivorans ATCC 17616|Rep: Putative
uncharacterized protein - Burkholderia multivorans ATCC
17616
Length = 737
Score = 35.1 bits (77), Expect = 2.1
Identities = 19/49 (38%), Positives = 22/49 (44%)
Frame = +1
Query: 613 SRRCLCARSKGGVSTSRRARPCRTPGVGXRSSTAXKXRRQVPRASRPRG 759
+RRC CAR T+RRAR R P R A R+ RP G
Sbjct: 606 ARRCACARRGDARRTARRARAHRAPAAAVRGGRARCAAGADRRSRRPAG 654
>UniRef50_Q231J0 Cluster: Cyclic nucleotide-binding domain
containing protein; n=1; Tetrahymena thermophila
SB210|Rep: Cyclic nucleotide-binding domain containing
protein - Tetrahymena thermophila SB210
Length = 1537
Score = 34.7 bits (76), Expect = 2.8
Identities = 14/42 (33%), Positives = 26/42 (61%)
Frame = -2
Query: 680 RHGLARLLVDTPPFERAQRHRLDSETVVHRIWNNINSNLSND 555
R ++++L+D+P + H LDS++ VHR N+N+ N+
Sbjct: 715 RRPISQILIDSPKNQSRSFHNLDSQSQVHRKSKNLNNKQINE 756
>UniRef50_Q4RQQ9 Cluster: Chromosome 2 SCAF15004, whole genome
shotgun sequence; n=2; Tetraodontidae|Rep: Chromosome 2
SCAF15004, whole genome shotgun sequence - Tetraodon
nigroviridis (Green puffer)
Length = 779
Score = 34.3 bits (75), Expect = 3.8
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Frame = +1
Query: 610 ESRRCLCARSKGGVSTSRRARPCRTPGVGXRSSTAXKXR--RQVPRASRPRGTNSTRHSX 783
+SRR +RS+GG+ SR P R RS + + R + R+ R R + +R +
Sbjct: 300 KSRRRSGSRSRGGMRRSRSRSPKRRGATSRRSPSRSRSRSATRARRSRRSRSRSGSRRAG 359
Query: 784 GRQS 795
GR+S
Sbjct: 360 GRRS 363
>UniRef50_Q3JR83 Cluster: Putative uncharacterized protein; n=4;
Burkholderia|Rep: Putative uncharacterized protein -
Burkholderia pseudomallei (strain 1710b)
Length = 495
Score = 33.9 bits (74), Expect = 5.0
Identities = 21/61 (34%), Positives = 25/61 (40%), Gaps = 1/61 (1%)
Frame = +1
Query: 595 CTTVSESRRCLCARSKGGVSTSRRA-RPCRTPGVGXRSSTAXKXRRQVPRASRPRGTNST 771
C R C ++ S R R CR+ R S A RR R+SRPRGT
Sbjct: 396 CVLSCRDRCCTTTATREAARDSARLDRRCRSAARRDRRSAARAARRLARRSSRPRGTRVR 455
Query: 772 R 774
R
Sbjct: 456 R 456
>UniRef50_A2PZZ7 Cluster: GfV-D4-ORF1; n=4; Glypta fumiferanae
ichnovirus|Rep: GfV-D4-ORF1 - Glypta fumiferanae
ichnovirus
Length = 849
Score = 33.5 bits (73), Expect = 6.6
Identities = 20/65 (30%), Positives = 38/65 (58%)
Frame = -2
Query: 368 LELKPVIKQEIDDVKYESTIGPMTSTALLDNKMDVTDENVLPVPLSSIKEEDVKIDVTTV 189
L+++ +I ++I+DV + + +++ + DNK D +++P + SIK ED+ I TT
Sbjct: 469 LKIRDIIVRKIEDVNFTEQLDSVSNLFVTDNK--AIDMSIIPPVIRSIKCEDL-IKTTTG 525
Query: 188 STEIP 174
T P
Sbjct: 526 WTYDP 530
>UniRef50_A2DBJ3 Cluster: Putative uncharacterized protein; n=1;
Trichomonas vaginalis G3|Rep: Putative uncharacterized
protein - Trichomonas vaginalis G3
Length = 3556
Score = 33.5 bits (73), Expect = 6.6
Identities = 17/41 (41%), Positives = 28/41 (68%), Gaps = 1/41 (2%)
Frame = -2
Query: 374 SNLE-LKPVIKQEIDDVKYESTIGPMTSTALLDNKMDVTDE 255
+N+E +KP+IK +++ + + TI P+ L +NK DVTDE
Sbjct: 2994 TNVESMKPIIKTSLNNFEPKPTI-PVQEDVLTENKRDVTDE 3033
>UniRef50_UPI0000499A4C Cluster: diphthamide synthesis protein; n=1;
Entamoeba histolytica HM-1:IMSS|Rep: diphthamide
synthesis protein - Entamoeba histolytica HM-1:IMSS
Length = 344
Score = 33.1 bits (72), Expect = 8.7
Identities = 27/85 (31%), Positives = 42/85 (49%)
Frame = -2
Query: 365 ELKPVIKQEIDDVKYESTIGPMTSTALLDNKMDVTDENVLPVPLSSIKEEDVKIDVTTVS 186
+ K ++K +ID + E IG +TST VTD N++ ++ E++ KI V T +
Sbjct: 215 KFKQIMKTKIDTARKEKYIGVITSTLGRQGNQKVTD-NII-----NLLEKNNKIPVVTYA 268
Query: 185 TEIPLRVFNDDSKREFSSDNAVALP 111
EI + DS +E VA P
Sbjct: 269 DEISTAIL--DSYKEVKVWVQVACP 291
>UniRef50_Q4ER48 Cluster: ABC transporter, substrate-binding
protein, putative; n=13; Listeria|Rep: ABC transporter,
substrate-binding protein, putative - Listeria
monocytogenes str. 1/2a F6854
Length = 273
Score = 33.1 bits (72), Expect = 8.7
Identities = 16/67 (23%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
Frame = -2
Query: 296 STALLDNKMDVTDENVLPVPLSSIKEEDVKIDVTTVSTEIPLRVFNDDSK--REFSSDNA 123
+TAL D +D + +P K++ K+DV + P+ ++++D K + +
Sbjct: 76 NTALNDGDLDANNYQTIPFLEQQKKDKGYKLDVAFKTVAFPMGIYSNDIKDLKNLKKGDK 135
Query: 122 VALPGIP 102
+A+P P
Sbjct: 136 IAVPNDP 142
>UniRef50_A6LT11 Cluster: 6-phosphogluconate dehydrogenase,
NAD-binding; n=3; Clostridiales|Rep: 6-phosphogluconate
dehydrogenase, NAD-binding - Clostridium beijerinckii
NCIMB 8052
Length = 291
Score = 33.1 bits (72), Expect = 8.7
Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 5/72 (6%)
Frame = -2
Query: 236 LSSIKEEDVKIDVTTVSTEIPLRVFNDDSKREFSSDNAVALPGIPGTSGP-----IGFEP 72
L + K+E ID+TT S ++ ++++N+ KRE + +A G G +G +
Sbjct: 82 LENAKKESCIIDMTTTSPKLSIKIYNEAKKREIYALDAPVSGGDVGAKNATLSIMVGGDL 141
Query: 71 GMFRPLKDELGA 36
+F KD L A
Sbjct: 142 EVFEKHKDVLSA 153
>UniRef50_Q0JHT2 Cluster: Os01g0844800 protein; n=6;
Magnoliophyta|Rep: Os01g0844800 protein - Oryza sativa
subsp. japonica (Rice)
Length = 1060
Score = 33.1 bits (72), Expect = 8.7
Identities = 20/42 (47%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Frame = +1
Query: 58 GLNIPGSKPMGPEV--PGIPGRATALSELNSRFESSLKTLKG 177
G+ PGS P+G V P PG LSE N RF S+L+ L G
Sbjct: 652 GMAYPGS-PLGSPVASPSGPGSPLRLSERNMRFPSNLRNLGG 692
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 721,041,694
Number of Sequences: 1657284
Number of extensions: 13643531
Number of successful extensions: 50370
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 46072
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 50261
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 71200899835
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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