Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_B17
         (819 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22A12.09c |sap114||splicing factor Sap114|Schizosaccharomyce...    28   1.8  
SPBC18H10.20c |||conserved fungal protein|Schizosaccharomyces po...    27   4.2  
SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5 |Schizo...    26   5.6  
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar...    26   7.4  
SPAPJ698.03c |prp12|sap130|U2 snRNP-associated protein Sap130 |S...    25   9.8  
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch...    25   9.8  

>SPAC22A12.09c |sap114||splicing factor Sap114|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 481

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 12/44 (27%), Positives = 23/44 (52%)
 Frame = +1

Query: 625 LCARSKGGVSTSRRARPCRTPGVGXRSSTAXKXRRQVPRASRPR 756
           L +  KGG+S++    P         ++T  K ++ VP+A +P+
Sbjct: 337 LASPEKGGISSTTSVSPAAQASPVLSTTTQPKVQKPVPKAFQPK 380


>SPBC18H10.20c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 361

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = -2

Query: 656 VDTP-PFERAQRHRLDSETVVHRIWNNINSNLSNDARLRCDLV 531
           V+ P PF     H L  ET+V+R  N   +N+ N   LR  +V
Sbjct: 287 VEIPAPFSLKVSHHLIFETIVNRKKNVAGNNMGNARILRVSVV 329


>SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1065

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = +1

Query: 115 RATALSELNSRFESSLKTLKGISVETVVTSIFTSSSLILD 234
           R TA++ELN  F +S +    IS+E         +S +++
Sbjct: 818 RQTAITELNEEFATSSEVDNKISIEETKLKFMNVNSYVME 857


>SPAC57A7.04c |pabp||mRNA export shuttling protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 653

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -2

Query: 128 NAVALPGIPGTSGPIGFEPGMFRPLKDELGAP 33
           N   +P +PG +GP+   PGM  P +   G P
Sbjct: 496 NGRGMPMVPGHNGPMPMYPGM--PTQFPAGGP 525


>SPAPJ698.03c |prp12|sap130|U2 snRNP-associated protein Sap130
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1206

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -2

Query: 626 RHRLDSETVVHRIWNNINSNLSNDARL 546
           R +  S   +   WN +NSN +ND  L
Sbjct: 278 RRQAASANAISTPWNQVNSNSANDGPL 304


>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
           Mok13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2358

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +2

Query: 173 REFQWKLSLRQSSRPPL*YW 232
           RE  W L+  QS+  PL YW
Sbjct: 27  RESLWNLNQNQSATDPLDYW 46


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,864,984
Number of Sequences: 5004
Number of extensions: 53451
Number of successful extensions: 173
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 400438000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)