Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_B17
         (819 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1320 + 36272716-36273339,36274222-36275762,36276349-362764...    33   0.27 
02_04_0537 - 23734010-23734715,23735326-23735333                       29   3.4  
12_01_0727 + 6446283-6449300                                           29   5.9  
06_03_0136 + 17056256-17056420,17056864-17057036,17057272-170572...    29   5.9  
03_06_0698 + 35608666-35608709,35608810-35608958,35609493-356095...    29   5.9  
02_01_0385 + 2783387-2783695,2784149-2785082,2785206-2785309,278...    28   7.8  

>01_06_1320 +
           36272716-36273339,36274222-36275762,36276349-36276490,
           36276622-36276729,36276814-36277026,36277113-36277223,
           36278056-36278250,36278874-36279048,36279189-36279226
          Length = 1048

 Score = 33.1 bits (72), Expect = 0.27
 Identities = 20/42 (47%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
 Frame = +1

Query: 58  GLNIPGSKPMGPEV--PGIPGRATALSELNSRFESSLKTLKG 177
           G+  PGS P+G  V  P  PG    LSE N RF S+L+ L G
Sbjct: 640 GMAYPGS-PLGSPVASPSGPGSPLRLSERNMRFPSNLRNLGG 680


>02_04_0537 - 23734010-23734715,23735326-23735333
          Length = 237

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 21/51 (41%), Positives = 25/51 (49%), Gaps = 7/51 (13%)
 Frame = +1

Query: 625 LCARSKGGVSTS--RRARPCRTP-----GVGXRSSTAXKXRRQVPRASRPR 756
           + ARS   +S S  RRA P R+P     G G R S A       PR+SR R
Sbjct: 92  MMARSSAAISPSPPRRASPARSPTAGAAGGGGRRSPASPRTASSPRSSRAR 142


>12_01_0727 + 6446283-6449300
          Length = 1005

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 11/28 (39%), Positives = 20/28 (71%)
 Frame = +1

Query: 79  KPMGPEVPGIPGRATALSELNSRFESSL 162
           +PM   VP +PG+A+AL +L   F++++
Sbjct: 22  QPMAAPVPCLPGQASALLQLKRSFDATV 49


>06_03_0136 +
           17056256-17056420,17056864-17057036,17057272-17057297,
           17057524-17057922,17058190-17058265,17058432-17058507,
           17058930-17059013,17059446-17059570,17060146-17060389,
           17060968-17061031,17061218-17061726
          Length = 646

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
 Frame = -2

Query: 377 QSNLELKPVIKQEIDDVKYESTIGPMTSTALLDNKMDVTDENVL---PVPLSSIKEEDVK 207
           ++NL+  P    E++ +  E   GP+ +T   D  +D+  ++ +   P  + S K  DV 
Sbjct: 145 ETNLQTIPPNLNEVNPLASEGESGPVDNTKASDGIIDLEGQDQVDGEPTTMDSTKVPDVI 204

Query: 206 IDV 198
           ID+
Sbjct: 205 IDL 207


>03_06_0698 +
           35608666-35608709,35608810-35608958,35609493-35609531,
           35610024-35610163,35611130-35611244,35611281-35611399,
           35611413-35611979
          Length = 390

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = +1

Query: 538 SHRRRASFDKLLFILFHILCTTVSESRRCLCARSKGGVSTSRRA 669
           +HR+     K+L +    LC+T+ E +    A   GG S  RRA
Sbjct: 133 NHRKMEDEQKILCLAKSSLCSTMDEQQLAQYATLAGGGSVRRRA 176


>02_01_0385 + 2783387-2783695,2784149-2785082,2785206-2785309,
            2785402-2785486,2785517-2787578,2787732-2787753,
            2788157-2788327,2791473-2791517,2792558-2793874,
            2793962-2794012,2794090-2794188,2794352-2794504,
            2794554-2794571
          Length = 1789

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 16/68 (23%), Positives = 31/68 (45%)
 Frame = -2

Query: 344  QEIDDVKYESTIGPMTSTALLDNKMDVTDENVLPVPLSSIKEEDVKIDVTTVSTEIPLRV 165
            Q  ++   ++  GP  +T L   K  ++D    P  L         + +   S+++PLR 
Sbjct: 1277 QSTEERTIQNYDGPGITTRLNPMKTRLSDNQERPRYLRDSFRSSTSMAIHGSSSKVPLRK 1336

Query: 164  FNDDSKRE 141
            F D+ +R+
Sbjct: 1337 FGDEKRRQ 1344


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,719,339
Number of Sequences: 37544
Number of extensions: 383949
Number of successful extensions: 1361
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1320
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1361
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2244686244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)