Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_T7_B17
(819 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF125451-5|AAD12824.1| 1086|Caenorhabditis elegans Taf (tbp-asso... 43 3e-04
Z19157-2|CAA79568.1| 826|Caenorhabditis elegans Hypothetical pr... 29 5.3
U50191-3|AAK31557.1| 380|Caenorhabditis elegans Dumpy : shorter... 29 5.3
L12706-1|AAA17398.2| 360|Caenorhabditis elegans collagen protein. 29 5.3
Z46792-4|CAA86767.2| 1531|Caenorhabditis elegans Hypothetical pr... 28 9.2
Z46791-8|CAA86762.2| 1531|Caenorhabditis elegans Hypothetical pr... 28 9.2
Z29095-2|CAD18875.1| 2056|Caenorhabditis elegans Hypothetical pr... 28 9.2
Z29095-1|CAA82353.2| 2045|Caenorhabditis elegans Hypothetical pr... 28 9.2
U23515-15|AAK21452.1| 928|Caenorhabditis elegans Kinesin-like p... 28 9.2
AF101318-7|AAC69345.1| 826|Caenorhabditis elegans Hypothetical ... 28 9.2
AB023497-1|BAA88682.1| 928|Caenorhabditis elegans kinesin like ... 28 9.2
>AF125451-5|AAD12824.1| 1086|Caenorhabditis elegans Taf
(tbp-associated transcriptionfactor) family protein 2
protein.
Length = 1086
Score = 42.7 bits (96), Expect = 3e-04
Identities = 22/72 (30%), Positives = 35/72 (48%)
Frame = -2
Query: 689 PGVRHGLARLLVDTPPFERAQRHRLDSETVVHRIWNNINSNLSNDARLRCDLVDLYYTLY 510
P +R + RLL TPP + ++ R+W + +N S D+ +R +D+YY+LY
Sbjct: 966 PSIRRMIPRLLAQTPPTIFGSENAANTAETAERLW-KLCTNSSIDSCIRSGFLDVYYSLY 1024
Query: 509 GAKRPICCPLPE 474
P PE
Sbjct: 1025 ALGAPPALGGPE 1036
>Z19157-2|CAA79568.1| 826|Caenorhabditis elegans Hypothetical
protein ZC84.3 protein.
Length = 826
Score = 28.7 bits (61), Expect = 5.3
Identities = 14/38 (36%), Positives = 23/38 (60%)
Frame = +1
Query: 559 FDKLLFILFHILCTTVSESRRCLCARSKGGVSTSRRAR 672
+ KLL LF IL + SE+ + +C R G + T++ A+
Sbjct: 636 YAKLLLNLFEILSKSRSENNKKMCLRILGKMCTAQAAK 673
>U50191-3|AAK31557.1| 380|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 2 protein.
Length = 380
Score = 28.7 bits (61), Expect = 5.3
Identities = 15/34 (44%), Positives = 18/34 (52%)
Frame = -2
Query: 134 SDNAVALPGIPGTSGPIGFEPGMFRPLKDELGAP 33
SD PG PG +GPIG PG P+ D+ P
Sbjct: 199 SDGMPGKPGDPGLAGPIG-PPGESGPIGDKGRTP 231
>L12706-1|AAA17398.2| 360|Caenorhabditis elegans collagen protein.
Length = 360
Score = 28.7 bits (61), Expect = 5.3
Identities = 15/34 (44%), Positives = 18/34 (52%)
Frame = -2
Query: 134 SDNAVALPGIPGTSGPIGFEPGMFRPLKDELGAP 33
SD PG PG +GPIG PG P+ D+ P
Sbjct: 199 SDGMPGKPGDPGLAGPIG-PPGESGPIGDKGRTP 231
>Z46792-4|CAA86767.2| 1531|Caenorhabditis elegans Hypothetical protein
C09G5.8 protein.
Length = 1531
Score = 27.9 bits (59), Expect = 9.2
Identities = 19/70 (27%), Positives = 29/70 (41%), Gaps = 2/70 (2%)
Frame = -2
Query: 341 EIDDVKYESTIGPMTSTALLDNKMDVTDENVLPVPLSSIKEEDVKIDVTT--VSTEIPLR 168
E+ ++YE + S + K N+LP+ L + ED D T V+ + L
Sbjct: 858 EMCTLRYEIEVSQPISDSFKKFKKSEMARNMLPLQLENEDTEDTNFDPLTIMVNRVVGLD 917
Query: 167 VFNDDSKREF 138
F D EF
Sbjct: 918 TFGKDPSTEF 927
>Z46791-8|CAA86762.2| 1531|Caenorhabditis elegans Hypothetical protein
C09G5.8 protein.
Length = 1531
Score = 27.9 bits (59), Expect = 9.2
Identities = 19/70 (27%), Positives = 29/70 (41%), Gaps = 2/70 (2%)
Frame = -2
Query: 341 EIDDVKYESTIGPMTSTALLDNKMDVTDENVLPVPLSSIKEEDVKIDVTT--VSTEIPLR 168
E+ ++YE + S + K N+LP+ L + ED D T V+ + L
Sbjct: 858 EMCTLRYEIEVSQPISDSFKKFKKSEMARNMLPLQLENEDTEDTNFDPLTIMVNRVVGLD 917
Query: 167 VFNDDSKREF 138
F D EF
Sbjct: 918 TFGKDPSTEF 927
>Z29095-2|CAD18875.1| 2056|Caenorhabditis elegans Hypothetical protein
R10E11.1b protein.
Length = 2056
Score = 27.9 bits (59), Expect = 9.2
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = +1
Query: 31 LGAPSSSFRGLNIPGSKPMGPEVPGIPGRATALSELNSRF 150
+G P +SF G+ G P PG+PG ++ SR+
Sbjct: 1718 MGQPMNSFGGMPGMGLGPNAQNGPGLPGMNPQMNANQSRY 1757
>Z29095-1|CAA82353.2| 2045|Caenorhabditis elegans Hypothetical protein
R10E11.1a protein.
Length = 2045
Score = 27.9 bits (59), Expect = 9.2
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = +1
Query: 31 LGAPSSSFRGLNIPGSKPMGPEVPGIPGRATALSELNSRF 150
+G P +SF G+ G P PG+PG ++ SR+
Sbjct: 1707 MGQPMNSFGGMPGMGLGPNAQNGPGLPGMNPQMNANQSRY 1746
>U23515-15|AAK21452.1| 928|Caenorhabditis elegans Kinesin-like
protein protein 6 protein.
Length = 928
Score = 27.9 bits (59), Expect = 9.2
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = -2
Query: 257 ENVLPVPLSSIKEEDVKIDVTTVSTEIPLRVFNDDSKR 144
EN+ VP++S KE + KI+ T S I N S R
Sbjct: 189 ENLTTVPVNSFKEIEAKIEEGTKSRTIAATQMNATSSR 226
>AF101318-7|AAC69345.1| 826|Caenorhabditis elegans Hypothetical
protein Y73C8C.3 protein.
Length = 826
Score = 27.9 bits (59), Expect = 9.2
Identities = 17/65 (26%), Positives = 29/65 (44%)
Frame = -2
Query: 326 KYESTIGPMTSTALLDNKMDVTDENVLPVPLSSIKEEDVKIDVTTVSTEIPLRVFNDDSK 147
+YE+ + T L + V + VPL+ E +K ++ V+ + FND S
Sbjct: 125 RYETEVAMATVATYLKIRESVLKSDCELVPLAQSDLERIKNNIQIVNNSLVNSAFNDLSL 184
Query: 146 REFSS 132
EF +
Sbjct: 185 LEFEN 189
>AB023497-1|BAA88682.1| 928|Caenorhabditis elegans kinesin like
protein KLP-6 protein.
Length = 928
Score = 27.9 bits (59), Expect = 9.2
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = -2
Query: 257 ENVLPVPLSSIKEEDVKIDVTTVSTEIPLRVFNDDSKR 144
EN+ VP++S KE + KI+ T S I N S R
Sbjct: 189 ENLTTVPVNSFKEIEAKIEEGTKSRTIAATQMNATSSR 226
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,276,322
Number of Sequences: 27780
Number of extensions: 325802
Number of successful extensions: 1763
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1278
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1740
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2019417216
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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