Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_B16
         (811 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_2012| Best HMM Match : Extensin_2 (HMM E-Value=0.1)                 31   0.84 
SB_37483| Best HMM Match : Drf_FH1 (HMM E-Value=6.6)                   31   1.5  
SB_15888| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.9  
SB_56721| Best HMM Match : DUF755 (HMM E-Value=0.52)                   29   3.4  
SB_42986| Best HMM Match : Glycos_transf_4 (HMM E-Value=1.5)           29   3.4  
SB_12185| Best HMM Match : AAA_5 (HMM E-Value=0.002)                   29   3.4  
SB_18127| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.5  
SB_48071| Best HMM Match : AAA_5 (HMM E-Value=3.1e-06)                 29   4.5  
SB_48726| Best HMM Match : E1-E2_ATPase (HMM E-Value=7.7e-07)          29   5.9  
SB_39072| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.9  
SB_23156| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.9  
SB_1375| Best HMM Match : Extensin_2 (HMM E-Value=0.18)                29   5.9  
SB_19322| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.8  
SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.8  
SB_35094| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.8  
SB_5404| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.8  

>SB_2012| Best HMM Match : Extensin_2 (HMM E-Value=0.1)
          Length = 305

 Score = 31.5 bits (68), Expect = 0.84
 Identities = 22/83 (26%), Positives = 31/83 (37%)
 Frame = -3

Query: 758 PPLXXXAXIXXVSALCIKPPSPAXSGTSNPIIKSPIPYTNHPRLNIHFHQSPDAVLEGVR 579
           PP+   A +   +        P  SG   P    P P    P L +     P +VL    
Sbjct: 168 PPIAPAATVPAPAVPLAAASPPPPSGGPPPPPPPPPPPPPPPILELAAPPPPGSVLGAAL 227

Query: 578 AGVKASVVIRGSISVSHPLVTGH 510
            G+K+ VV  G  S+    + GH
Sbjct: 228 TGIKSGVVGGGGESLMDSFLLGH 250


>SB_37483| Best HMM Match : Drf_FH1 (HMM E-Value=6.6)
          Length = 237

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 17/58 (29%), Positives = 27/58 (46%)
 Frame = -1

Query: 718 PYASSHPPLRXRVHQTRSSNPRFHTPTTPDLTSISINPLTPY*KEFAPGLKPPLSSEA 545
           PY ++  P +   H T +S P  +TP +    S +    TPY      G  PP +S++
Sbjct: 56  PYTATPAPAQQAPHTTAASQPAPYTPASGQPASYT-PAYTPYTPASTVGRMPPTTSQS 112


>SB_15888| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2437

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 16/48 (33%), Positives = 24/48 (50%)
 Frame = -1

Query: 583  FAPGLKPPLSSEAPSAYLTPSSLGMXKGVSPPYFQVNDESQASRLISR 440
            FA     P SS++PSA  +P+S       SP  F  + E +   +IS+
Sbjct: 1096 FATTTMSPTSSQSPSAVTSPTSPRSPSNPSPASFGFHSEDEPVTMISK 1143


>SB_56721| Best HMM Match : DUF755 (HMM E-Value=0.52)
          Length = 516

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 17/63 (26%), Positives = 30/63 (47%)
 Frame = -1

Query: 643 PTTPDLTSISINPLTPY*KEFAPGLKPPLSSEAPSAYLTPSSLGMXKGVSPPYFQVNDES 464
           P TP   S S  P++P  +   P  +P     +PS  LT +       ++P + +V++E 
Sbjct: 51  PKTPSEPSDSPGPMSPEPEIMTPTPEPSPKHRSPSPKLTKTPTPPSWSLTPLHDEVDEEE 110

Query: 463 QAS 455
           + S
Sbjct: 111 EGS 113


>SB_42986| Best HMM Match : Glycos_transf_4 (HMM E-Value=1.5)
          Length = 279

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = -1

Query: 685 RVHQTRSSNPRFHTPTTPDLTSISINPLTPY*KEFAPGLKPPLSSEA-PSAY 533
           RV QTRSS+     P  P L+S + +   P     +  L PP SS + PS++
Sbjct: 82  RVSQTRSSSSSQSLPPPPSLSSQTSSSSPPPSSSSSQSLPPPPSSSSQPSSH 133


>SB_12185| Best HMM Match : AAA_5 (HMM E-Value=0.002)
          Length = 3616

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 17/66 (25%), Positives = 34/66 (51%)
 Frame = -2

Query: 234  PFDTVLYDNIRTVLKDNKTALLSASIQASLPSSEIYRQLVDPRHVSSDSFGVYVKS*SLI 55
            P D +  +N+ +VL DNKT  L+   +  +P S   + + +P ++ + S     ++  + 
Sbjct: 2292 PVDAIWIENLNSVLDDNKTLTLANGDR--IPMSPQCKIVFEPHNIDNASPATVSRNGMVY 2349

Query: 54   LHSFGL 37
            + S GL
Sbjct: 2350 MSSSGL 2355


>SB_18127| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 963

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = -1

Query: 679 HQTRSSNP-RFHTPTTPDLTSISINPLTPY 593
           H+   SN     TPT PD+T +SI  L PY
Sbjct: 63  HKENGSNSGESATPTRPDVTQLSITGLKPY 92


>SB_48071| Best HMM Match : AAA_5 (HMM E-Value=3.1e-06)
          Length = 1532

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 14/49 (28%), Positives = 27/49 (55%)
 Frame = -2

Query: 234  PFDTVLYDNIRTVLKDNKTALLSASIQASLPSSEIYRQLVDPRHVSSDS 88
            P D +  +N+ +VL DNKT  L+   +  +P S   + + +P ++ + S
Sbjct: 1384 PVDAIWIENLNSVLDDNKTLTLANGDR--IPMSPTCKVVFEPHNIDNAS 1430


>SB_48726| Best HMM Match : E1-E2_ATPase (HMM E-Value=7.7e-07)
          Length = 592

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 29/98 (29%), Positives = 43/98 (43%), Gaps = 3/98 (3%)
 Frame = -2

Query: 354 YKVKIADNNLVTHKELALKVSSIIGTRVYVFDPSCYFSTPPFDTVLYDNIRTVLK---DN 184
           + + + DN L T   L +K+    G   +VFD         FDT+    +R   +   DN
Sbjct: 313 HSLTMIDNEL-TGDPLDIKMFEATG---WVFDEPGE-DNKKFDTIAPSTVRPKTREMTDN 367

Query: 183 KTALLSASIQASLPSSEIYRQLVDPRHVSSDSFGVYVK 70
           +  L    I+    SS++ R  V  R + SD   VYVK
Sbjct: 368 QVPLEVGIIRQFPFSSDVQRMTVITRILGSDHMDVYVK 405


>SB_39072| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1011

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 24/81 (29%), Positives = 30/81 (37%), Gaps = 2/81 (2%)
 Frame = -1

Query: 724 SRPYASSHP--PLRXRVHQTRSSNPRFHTPTTPDLTSISINPLTPY*KEFAPGLKPPLSS 551
           S P   S P  P       T S+    +TP+TP   S+   P TP           P + 
Sbjct: 250 STPSTPSMPSTPSTPSTPSTPSTPCTPNTPSTPSTPSMPSTPSTPSTPSTPSTPSTPSAP 309

Query: 550 EAPSAYLTPSSLGMXKGVSPP 488
             PS   TPS+    K  S P
Sbjct: 310 STPSTPSTPSTPSTPKTPSTP 330



 Score = 28.7 bits (61), Expect = 5.9
 Identities = 24/81 (29%), Positives = 30/81 (37%), Gaps = 2/81 (2%)
 Frame = -1

Query: 724  SRPYASSHP--PLRXRVHQTRSSNPRFHTPTTPDLTSISINPLTPY*KEFAPGLKPPLSS 551
            S P   S P  P       T S+    +TP+TP   S+   P TP           P + 
Sbjct: 800  STPSTPSMPSTPSTPSTPSTPSTPCTPNTPSTPSTPSMPSTPSTPSTPSTPSTPSTPSAP 859

Query: 550  EAPSAYLTPSSLGMXKGVSPP 488
              PS   TPS+    K  S P
Sbjct: 860  STPSTPSTPSTPSTPKTPSTP 880


>SB_23156| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 267

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 19/71 (26%), Positives = 30/71 (42%)
 Frame = -1

Query: 637 TPDLTSISINPLTPY*KEFAPGLKPPLSSEAPSAYLTPSSLGMXKGVSPPYFQVNDESQA 458
           TP  +S SI+  +P  +     L PP  +  P + LTP S    + ++P          +
Sbjct: 153 TPAGSSSSISLASPGMRSSLGSLTPPSRTSTPRSRLTPRSRSRSRTITPSTPSTTSSRAS 212

Query: 457 SRLISRHSTHT 425
           SR  +R    T
Sbjct: 213 SRGSARGGAKT 223


>SB_1375| Best HMM Match : Extensin_2 (HMM E-Value=0.18)
          Length = 796

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 19/48 (39%), Positives = 23/48 (47%)
 Frame = -1

Query: 667 SSNPRFHTPTTPDLTSISINPLTPY*KEFAPGLKPPLSSEAPSAYLTP 524
           S+ PR H PTTP  T  +  P T            P +S+APSA  TP
Sbjct: 269 SAIPRGHLPTTPSTTPQATPPST------TSQTTAPTASQAPSAGETP 310


>SB_19322| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4994

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 14/49 (28%), Positives = 27/49 (55%)
 Frame = -2

Query: 234  PFDTVLYDNIRTVLKDNKTALLSASIQASLPSSEIYRQLVDPRHVSSDS 88
            P D +  +N+ +VL DNKT  L+   +  +P S   + + +P ++ + S
Sbjct: 2286 PVDAIWIENLNSVLDDNKTLTLANGDR--IPMSPQCKVVFEPHNIDNAS 2332


>SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2870

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
 Frame = -1

Query: 646  TPTTPDLTSISINPLTPY*KEFAPGL---KPPLSSEAPSAYLTPSSLGMXKGVSPP 488
            TPTTP  T+ +  P  P   E  P L    PP+ +  P+   TP++       +PP
Sbjct: 897  TPTTPKPTTPAPPPPLPLAPEPPPPLPPPPPPIQTTRPTVPTTPTTQASTTRPTPP 952


>SB_35094| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 179

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 16/33 (48%), Positives = 19/33 (57%)
 Frame = -1

Query: 721 RPYASSHPPLRXRVHQTRSSNPRFHTPTTPDLT 623
           RP  + +   R RVH TR  +PR HTP TP  T
Sbjct: 127 RPTHAEYTHAR-RVH-TRRVHPRLHTPVTPTPT 157


>SB_5404| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 179

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 16/33 (48%), Positives = 19/33 (57%)
 Frame = -1

Query: 721 RPYASSHPPLRXRVHQTRSSNPRFHTPTTPDLT 623
           RP  + +   R RVH TR  +PR HTP TP  T
Sbjct: 127 RPTHAEYTHAR-RVH-TRRVHPRLHTPVTPTPT 157


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,304,566
Number of Sequences: 59808
Number of extensions: 485918
Number of successful extensions: 1487
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1287
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1451
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2251677692
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)