Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_T7_B14
(815 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein L3|Sch... 115 9e-27
SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3 |Schiz... 115 9e-27
SPBPJ4664.01 |dps1|SPBPJ694.01|decaprenyl diphosphate synthase s... 27 2.4
SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr... 27 4.2
SPAC17D4.02 |cdc45|sna41, goa1|DNA replication pre-initiation co... 26 5.6
SPBC83.19c |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 5.6
SPBC21C3.05 |sap62||zinc finger protein Sap62|Schizosaccharomyce... 26 7.4
SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|c... 25 9.7
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ... 25 9.7
SPAC630.15 |mug177||sequence orphan|Schizosaccharomyces pombe|ch... 25 9.7
SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces p... 25 9.7
>SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein
L3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 388
Score = 115 bits (276), Expect = 9e-27
Identities = 49/71 (69%), Positives = 58/71 (81%)
Frame = -3
Query: 624 RGKGYKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKK 445
RGKG +G T+RW TK+LPRKTH+GLRKVACIGAWHP+ V +TVARAG GY HRT++N K
Sbjct: 222 RGKGNEGTTARWGTKRLPRKTHRGLRKVACIGAWHPANVQWTVARAGNAGYMHRTQLNSK 281
Query: 444 IYRIGXRNPQK 412
IYRIG + K
Sbjct: 282 IYRIGAGDDAK 292
Score = 91.9 bits (218), Expect = 1e-19
Identities = 41/61 (67%), Positives = 49/61 (80%)
Frame = -2
Query: 289 GCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKK 110
G GP KR++TLRKSL HT R ALE ++LK+IDT+SKFGHGRFQTPA+ F+GTLKK
Sbjct: 326 GATPGPVKRVLTLRKSLLTHTSRKALEPVSLKWIDTASKFGHGRFQTPAEAKQFLGTLKK 385
Query: 109 D 107
D
Sbjct: 386 D 386
Score = 75.8 bits (178), Expect = 7e-15
Identities = 55/167 (32%), Positives = 82/167 (49%)
Frame = -1
Query: 776 ATKEGSHYGIQLNGGTIRGQSEMGQRTSGEPIPVDSVFAQDEMIDCIGVTQGAKDTKVSL 597
A K+ IQ+NGG++ + E + + + + S F Q+EMID IGVT+G + +
Sbjct: 172 AQKKAHLMEIQVNGGSVADKVEWAREHFEKTVDIKSTFEQNEMIDVIGVTRGKGNEGTTA 231
Query: 596 LVGTQRSYPVRHTRVLGKLPALELGILLGCRSL*LVLVRKVIITVLK*TRKSIVLXQGIH 417
GT+R P + R L K+ + + + R + T+ L I+
Sbjct: 232 RWGTKR-LPRKTHRGLRKVACIGAWHPANVQ---WTVARAGNAGYMHRTQ----LNSKIY 283
Query: 416 KKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIQGLLHG 276
+ NAST++D +EK ITPMGGF YG V NDFVM+ G G
Sbjct: 284 RIGAGDDAKNASTDFDATEKRITPMGGFVRYGVVENDFVMLNGATPG 330
>SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 388
Score = 115 bits (276), Expect = 9e-27
Identities = 49/71 (69%), Positives = 58/71 (81%)
Frame = -3
Query: 624 RGKGYKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKK 445
RGKG +G T+RW TK+LPRKTH+GLRKVACIGAWHP+ V +TVARAG GY HRT++N K
Sbjct: 222 RGKGNEGTTARWGTKRLPRKTHRGLRKVACIGAWHPANVQWTVARAGNAGYMHRTQLNSK 281
Query: 444 IYRIGXRNPQK 412
IYRIG + K
Sbjct: 282 IYRIGAGDDAK 292
Score = 91.9 bits (218), Expect = 1e-19
Identities = 41/61 (67%), Positives = 49/61 (80%)
Frame = -2
Query: 289 GCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKK 110
G GP KR++TLRKSL HT R ALE ++LK+IDT+SKFGHGRFQTPA+ F+GTLKK
Sbjct: 326 GATPGPVKRVLTLRKSLLTHTSRKALEPVSLKWIDTASKFGHGRFQTPAEAKQFLGTLKK 385
Query: 109 D 107
D
Sbjct: 386 D 386
Score = 75.8 bits (178), Expect = 7e-15
Identities = 55/167 (32%), Positives = 82/167 (49%)
Frame = -1
Query: 776 ATKEGSHYGIQLNGGTIRGQSEMGQRTSGEPIPVDSVFAQDEMIDCIGVTQGAKDTKVSL 597
A K+ IQ+NGG++ + E + + + + S F Q+EMID IGVT+G + +
Sbjct: 172 AQKKAHLMEIQVNGGSVADKVEWAREHFEKTVDIKSTFEQNEMIDVIGVTRGKGNEGTTA 231
Query: 596 LVGTQRSYPVRHTRVLGKLPALELGILLGCRSL*LVLVRKVIITVLK*TRKSIVLXQGIH 417
GT+R P + R L K+ + + + R + T+ L I+
Sbjct: 232 RWGTKR-LPRKTHRGLRKVACIGAWHPANVQ---WTVARAGNAGYMHRTQ----LNSKIY 283
Query: 416 KKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIQGLLHG 276
+ NAST++D +EK ITPMGGF YG V NDFVM+ G G
Sbjct: 284 RIGAGDDAKNASTDFDATEKRITPMGGFVRYGVVENDFVMLNGATPG 330
>SPBPJ4664.01 |dps1|SPBPJ694.01|decaprenyl diphosphate synthase
subunit Dps1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 378
Score = 27.5 bits (58), Expect = 2.4
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = -2
Query: 724 EDKVKWAREHLENLSLSILCLP 659
E + WA+E+++ S+LCLP
Sbjct: 337 EQTITWAKEYIKKAKDSLLCLP 358
>SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 511
Score = 26.6 bits (56), Expect = 4.2
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -1
Query: 128 HGYTQEGSYSRRSCGYHNPS 69
HGY+ + R+ C YHNPS
Sbjct: 307 HGYSMY-ALERKMCNYHNPS 325
>SPAC17D4.02 |cdc45|sna41, goa1|DNA replication pre-initiation
complex subunit Cdc45|Schizosaccharomyces pombe|chr
1|||Manual
Length = 638
Score = 26.2 bits (55), Expect = 5.6
Identities = 16/49 (32%), Positives = 23/49 (46%)
Frame = -2
Query: 493 SCWSERLSSPY*NEQENLSYWXKESTKRMAKLLKTMHLLSMICLRNPLH 347
S + L S Y + L W +E KR+ KLL M L + C + +H
Sbjct: 322 SLYDSMLHSAYVGSR--LHIWSEEGRKRLHKLLAKMGLSLVECKQTYIH 368
>SPBC83.19c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 119
Score = 26.2 bits (55), Expect = 5.6
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = -2
Query: 469 SPY*NEQENLSYWXKESTKRMAKLLKTMHLLSMICLRNPLHRWEVSP 329
SP+ + L+Y E + K + + + LRNPL R++VSP
Sbjct: 63 SPFCCFTDTLAYLRCEPYRGYRKCIYRKVKMPNLILRNPLVRYDVSP 109
>SPBC21C3.05 |sap62||zinc finger protein Sap62|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 25.8 bits (54), Expect = 7.4
Identities = 16/72 (22%), Positives = 32/72 (44%)
Frame = -3
Query: 687 TYPCRFCVCPR*ND*LHWCHPRGKGYKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRV 508
T+ CR C+ N+ + H +GK ++ +R + + + + I H +V
Sbjct: 53 TFECRLCLTTHANENSYLTHTQGKKHQTNLARRQALENKKSQENAPQVLLGISQSH-VQV 111
Query: 507 SFTVARAGQKGY 472
+V + G+ GY
Sbjct: 112 KKSVVKIGRPGY 123
>SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 479
Score = 25.4 bits (53), Expect = 9.7
Identities = 14/28 (50%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Frame = +3
Query: 576 ASLCANEK*HLCILCPLGDTN-AVNHFI 656
A+ C N HL P DTN A NHFI
Sbjct: 246 ATFCVNSLAHLIGSQPFDDTNSARNHFI 273
>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1955
Score = 25.4 bits (53), Expect = 9.7
Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 1/82 (1%)
Frame = +1
Query: 280 CSNPWIITKSLFTSP*WGKPPIGVMDFSDRSYSVDALFLITLPSFLWIPXSNTIDFLVHF 459
CS W ++ F P + +G+M F+D L L L ++LW NTI ++
Sbjct: 724 CSIYWAGSRLCFVQP---RIILGIMYFTD-------LILFFLDTYLWYIIFNTIFSVLRS 773
Query: 460 STVMITFLTS-TSYSERHPRRM 522
+ I+ LT + R P+R+
Sbjct: 774 FVLGISILTPWRNIFSRMPQRI 795
>SPAC630.15 |mug177||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 105
Score = 25.4 bits (53), Expect = 9.7
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +3
Query: 525 KLQCRQLS*DPCVSYGVASLCANEK*HLCILCPLGDTN 638
+L RQLS V+ G+ LC + +C+ P D++
Sbjct: 67 RLNDRQLSCVESVTNGIGLLCLKQADQVCLFTPTVDSH 104
>SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 525
Score = 25.4 bits (53), Expect = 9.7
Identities = 15/58 (25%), Positives = 29/58 (50%)
Frame = +3
Query: 276 PMQQPLDHHKVVVYFTIMGETSHRCNGFLRQIILSRCIVFNNFAILFVDSLXQYDRFS 449
P PLD ++ I+GE + G ++Q++ + + AIL +D L + D+ +
Sbjct: 392 PAVDPLDSKSRMMDPRILGEEHYNLAGSVQQMLQEYKSLQDIIAILGMDELSEADKLT 449
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,462,936
Number of Sequences: 5004
Number of extensions: 74603
Number of successful extensions: 206
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 204
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 398435810
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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