Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_B14
         (815 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51931| Best HMM Match : Ribosomal_L3 (HMM E-Value=0)               130   1e-30
SB_14332| Best HMM Match : Ribosomal_L3 (HMM E-Value=8.6e-34)         108   6e-24
SB_7140| Best HMM Match : No HMM Matches (HMM E-Value=.)               62   4e-10
SB_4387| Best HMM Match : No HMM Matches (HMM E-Value=.)               33   0.37 
SB_45408| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.37 
SB_4606| Best HMM Match : HlyIII (HMM E-Value=0.002)                   29   3.4  
SB_6540| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   6.0  
SB_51282| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  
SB_26123| Best HMM Match : NHL (HMM E-Value=3.5e-08)                   28   7.9  

>SB_51931| Best HMM Match : Ribosomal_L3 (HMM E-Value=0)
          Length = 338

 Score =  130 bits (315), Expect = 1e-30
 Identities = 56/65 (86%), Positives = 61/65 (93%)
 Frame = -3

Query: 624 RGKGYKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKK 445
           +G G+KGVT RW TKKLPRKTHKGLRKVACIGAWHP+RVSF+VARAGQ GYHHRTE+NKK
Sbjct: 224 KGHGFKGVTYRWGTKKLPRKTHKGLRKVACIGAWHPARVSFSVARAGQAGYHHRTELNKK 283

Query: 444 IYRIG 430
           IYRIG
Sbjct: 284 IYRIG 288



 Score = 78.2 bits (184), Expect = 7e-15
 Identities = 59/151 (39%), Positives = 81/151 (53%), Gaps = 3/151 (1%)
 Frame = -1

Query: 785 VKTATKEGSHYGIQLNGGT-IRGQSEMGQRTSGEPIPVDSVFAQDEMIDCIGVTQGAKDT 609
           +K   K+     IQ+NGG  +  + +  +     P PV  VF+ DEMID IGVT+G    
Sbjct: 170 LKMRQKKAHIMEIQVNGGKDVAEKVDWCRERLENPAPVRKVFSPDEMIDVIGVTKGHGFK 229

Query: 608 KVSLLVGTQRSYPVRHTRVLGKLPALELGILLGCR-SL*LVLVRKVIITVLK*TRKSIV- 435
            V+   GT++  P +  + L K+  +  G     R S  +    +          K I  
Sbjct: 230 GVTYRWGTKK-LPRKTHKGLRKVACI--GAWHPARVSFSVARAGQAGYHHRTELNKKIYR 286

Query: 434 LXQGIHKKDGKVIKNNASTEYDLSEKSITPM 342
           + QGIHKKDGKVIKNNASTEYDL++KSI+PM
Sbjct: 287 IGQGIHKKDGKVIKNNASTEYDLTDKSISPM 317



 Score = 42.3 bits (95), Expect = 5e-04
 Identities = 21/41 (51%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = -2

Query: 805 CPHSNELLKQRQKKXHIMESNLT-GVPFEDKVKWAREHLEN 686
           C    +LLK RQKK HIME  +  G    +KV W RE LEN
Sbjct: 163 CHTQQKLLKMRQKKAHIMEIQVNGGKDVAEKVDWCRERLEN 203


>SB_14332| Best HMM Match : Ribosomal_L3 (HMM E-Value=8.6e-34)
          Length = 347

 Score =  108 bits (259), Expect = 6e-24
 Identities = 50/66 (75%), Positives = 55/66 (83%)
 Frame = -2

Query: 292 KGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLK 113
           KGC +GPKKR++TLRKSL VHT R A EKI LKFIDTSSKFGHGRFQ PA+K AFMG LK
Sbjct: 231 KGCVVGPKKRVLTLRKSLLVHTSRDAAEKITLKFIDTSSKFGHGRFQHPAEKRAFMGMLK 290

Query: 112 KDRIRE 95
            DR +E
Sbjct: 291 SDREKE 296



 Score = 39.9 bits (89), Expect = 0.002
 Identities = 14/22 (63%), Positives = 19/22 (86%)
 Frame = -1

Query: 341 GGFPHYGEVNNDFVMIQGLLHG 276
           GGFPHYG+VN DF+M++G + G
Sbjct: 215 GGFPHYGQVNEDFLMVKGCVVG 236


>SB_7140| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 58

 Score = 62.5 bits (145), Expect = 4e-10
 Identities = 28/36 (77%), Positives = 32/36 (88%)
 Frame = -1

Query: 449 RKSIVLXQGIHKKDGKVIKNNASTEYDLSEKSITPM 342
           +K   + QGIHKKDGKVIKNNASTEYDL++KSITPM
Sbjct: 11  KKIYRIGQGIHKKDGKVIKNNASTEYDLTDKSITPM 46



 Score = 39.5 bits (88), Expect = 0.003
 Identities = 15/16 (93%), Positives = 16/16 (100%)
 Frame = -3

Query: 477 GYHHRTEMNKKIYRIG 430
           GYHHRTE+NKKIYRIG
Sbjct: 2   GYHHRTELNKKIYRIG 17


>SB_4387| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 210

 Score = 32.7 bits (71), Expect = 0.37
 Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
 Frame = +1

Query: 589 PTRSDTFVSFAPWVT-PMQSIISSWA-NTESTGIGSPDVLWPISLCPRMVPPLSWIP 753
           P  +   V+  P++T PM  +  +   NT ST  G P +  P + CP M  P +  P
Sbjct: 2   PMTTHVIVAGGPYMTTPMTKVQGALQDNTHSTEAGEPYMTTPFAKCPNMATPFAKCP 58


>SB_45408| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 210

 Score = 32.7 bits (71), Expect = 0.37
 Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
 Frame = +1

Query: 589 PTRSDTFVSFAPWVT-PMQSIISSWA-NTESTGIGSPDVLWPISLCPRMVPPLSWIP 753
           P  +   V+  P++T PM  +  +   NT ST  G P +  P + CP M  P +  P
Sbjct: 2   PMTTHVIVAGGPYMTTPMTKVQGALQDNTHSTEAGEPYMTTPFAKCPNMATPFAKCP 58


>SB_4606| Best HMM Match : HlyIII (HMM E-Value=0.002)
          Length = 458

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +2

Query: 26  NVYFHGLHLRLRSSRWGCGSRSFFANTILLE 118
           N+Y HG+ L LR   +GCGS       +L++
Sbjct: 368 NIYSHGVRLFLRYLGYGCGSDGALPYCVLMD 398


>SB_6540| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 366

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 14/50 (28%), Positives = 24/50 (48%)
 Frame = -2

Query: 271 KKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMG 122
           K R++  +K  ++H+  +   K  ++F+   SKF H    T A   A  G
Sbjct: 317 KDRLLEWKKERQIHSFSSTTLKARIRFVAAMSKFAHTTEDTTAWDEATKG 366


>SB_51282| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 217

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 14/48 (29%), Positives = 23/48 (47%)
 Frame = -1

Query: 434 LXQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIQ 291
           L   + KK   V +N+  T  D    +   + GFPHY  + +D + I+
Sbjct: 38  LRGSLPKKCWTVTQNDVPTPLDCGLSAWRILSGFPHYKLIEDDHIEIK 85


>SB_26123| Best HMM Match : NHL (HMM E-Value=3.5e-08)
          Length = 545

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 14/42 (33%), Positives = 18/42 (42%)
 Frame = -1

Query: 158 IPDAG*QGCIHGYTQEGSYSRRSCGYHNPSGCCAALSVVREN 33
           I D G   CIH +T +G Y    C + +  G        REN
Sbjct: 410 ISDDG-ANCIHVFTLDGQYVSNECSWESHEGYTHIAVTAREN 450


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,624,856
Number of Sequences: 59808
Number of extensions: 599317
Number of successful extensions: 1328
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1245
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1327
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2275631710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)