Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_B14
         (815 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g61580.1 68414.m06939 60S ribosomal protein L3 (RPL3B) identi...   126   1e-29
At1g43170.2 68414.m04975 60S ribosomal protein L3 (RPL3A) identi...   125   3e-29
At1g43170.1 68414.m04974 60S ribosomal protein L3 (RPL3A) identi...   125   3e-29
At5g06260.1 68418.m00700 nucleolar protein-related contains weak...    29   2.8  
At5g46740.1 68418.m05758 ubiquitin-specific protease 21 (UBP21) ...    29   4.9  
At2g19740.1 68415.m02306 60S ribosomal protein L31 (RPL31A)            29   4.9  
At2g13100.1 68415.m01436 glycerol-3-phosphate transporter, putat...    29   4.9  
At1g71400.1 68414.m08246 disease resistance family protein / LRR...    28   6.4  
At1g67420.1 68414.m07674 24 kDa vacuolar protein, putative simil...    28   6.4  
At5g25070.1 68418.m02971 expressed protein                             28   8.5  
At5g22400.1 68418.m02613 rac GTPase activating protein, putative...    28   8.5  

>At1g61580.1 68414.m06939 60S ribosomal protein L3 (RPL3B) identical
           to ribosomal protein GI:806279 from [Arabidopsis
           thaliana]
          Length = 390

 Score =  126 bits (305), Expect = 1e-29
 Identities = 51/65 (78%), Positives = 60/65 (92%)
 Frame = -3

Query: 624 RGKGYKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKK 445
           +GKGY+GV +RW   +LPRKTH+GLRKVACIGAWHP+RVS+TVARAGQ GYHHRTEMNKK
Sbjct: 225 KGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKK 284

Query: 444 IYRIG 430
           +YR+G
Sbjct: 285 VYRVG 289



 Score = 81.8 bits (193), Expect = 5e-16
 Identities = 37/61 (60%), Positives = 47/61 (77%), Gaps = 1/61 (1%)
 Frame = -2

Query: 292 KGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMG-TL 116
           KGCC+GPKKR++TLR++L   T R A+E+I LKFID +S  GHGRFQT  +KA F G T+
Sbjct: 329 KGCCVGPKKRVVTLRQTLLKQTSRLAMEEIKLKFIDAASNGGHGRFQTSQEKAKFYGRTI 388

Query: 115 K 113
           K
Sbjct: 389 K 389



 Score = 77.8 bits (183), Expect = 8e-15
 Identities = 60/163 (36%), Positives = 83/163 (50%), Gaps = 5/163 (3%)
 Frame = -1

Query: 749 IQLNGGTIRGQSEMGQRTSGEPIPVDSVFAQDEMIDCIGVTQGAKDTKVSLLVGTQRSYP 570
           IQ+NGG I  + +       + +PVD++F +DEMID IGVT+G     V    G  R  P
Sbjct: 184 IQINGGDIAKKVDYACSLFEKQVPVDAIFQKDEMIDIIGVTKGKGYEGVVTRWGVTR-LP 242

Query: 569 VRHTRVLGKLPALELGILLGCRSL*LVLVRKVIITVLK*TRKSIVLXQGIHKKDGKVIK- 393
            +  R L K+  +  G     R         V  TV +  +        ++KK  +V K 
Sbjct: 243 RKTHRGLRKVACI--GAWHPAR---------VSYTVARAGQNGYHHRTEMNKKVYRVGKV 291

Query: 392 ----NNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIQGLLHG 276
               ++A TEYD +EK ITPMGGFPHYG V  D++MI+G   G
Sbjct: 292 GQETHSAMTEYDRTEKDITPMGGFPHYGIVKEDYLMIKGCCVG 334


>At1g43170.2 68414.m04975 60S ribosomal protein L3 (RPL3A) identical
           to ribosomal protein GI:166858 from [Arabidopsis
           thaliana]
          Length = 389

 Score =  125 bits (302), Expect = 3e-29
 Identities = 51/65 (78%), Positives = 60/65 (92%)
 Frame = -3

Query: 624 RGKGYKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKK 445
           +GKGY+GV +RW   +LPRKTH+GLRKVACIGAWHP+RVS+TVARAGQ GYHHRTE+NKK
Sbjct: 225 KGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTELNKK 284

Query: 444 IYRIG 430
           IYR+G
Sbjct: 285 IYRLG 289



 Score = 85.8 bits (203), Expect = 3e-17
 Identities = 38/61 (62%), Positives = 46/61 (75%)
 Frame = -2

Query: 292 KGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLK 113
           KGCC+GPKKR++TLR+SL   T R ALE+I LKFIDT+S FGHGRFQT  +K  F   + 
Sbjct: 329 KGCCVGPKKRVVTLRQSLLTQTSRLALEEIKLKFIDTASIFGHGRFQTSLEKMRFYNRVT 388

Query: 112 K 110
           K
Sbjct: 389 K 389



 Score = 79.0 bits (186), Expect = 3e-15
 Identities = 61/163 (37%), Positives = 84/163 (51%), Gaps = 5/163 (3%)
 Frame = -1

Query: 749 IQLNGGTIRGQSEMGQRTSGEPIPVDSVFAQDEMIDCIGVTQGAKDTKVSLLVGTQRSYP 570
           IQ+NGGTI  + +       + IP+++VF +DEMID IGVT+G     V    G  R  P
Sbjct: 184 IQINGGTIAQKVDFAYSFFEKQIPIEAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTR-LP 242

Query: 569 VRHTRVLGKLPALELGILLGCRSL*LVLVRKVIITVLK*TRKSIVLXQGIHKKD---GKV 399
            +  R L K+  +  G     R         V  TV +  +        ++KK    GKV
Sbjct: 243 RKTHRGLRKVACI--GAWHPAR---------VSYTVARAGQNGYHHRTELNKKIYRLGKV 291

Query: 398 --IKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIQGLLHG 276
               + A TEYD +EK +TPMGGFPHYG V +D++MI+G   G
Sbjct: 292 GTEAHTAMTEYDRTEKDVTPMGGFPHYGIVKDDYLMIKGCCVG 334


>At1g43170.1 68414.m04974 60S ribosomal protein L3 (RPL3A) identical
           to ribosomal protein GI:166858 from [Arabidopsis
           thaliana]
          Length = 389

 Score =  125 bits (302), Expect = 3e-29
 Identities = 51/65 (78%), Positives = 60/65 (92%)
 Frame = -3

Query: 624 RGKGYKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKK 445
           +GKGY+GV +RW   +LPRKTH+GLRKVACIGAWHP+RVS+TVARAGQ GYHHRTE+NKK
Sbjct: 225 KGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTELNKK 284

Query: 444 IYRIG 430
           IYR+G
Sbjct: 285 IYRLG 289



 Score = 85.8 bits (203), Expect = 3e-17
 Identities = 38/61 (62%), Positives = 46/61 (75%)
 Frame = -2

Query: 292 KGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLK 113
           KGCC+GPKKR++TLR+SL   T R ALE+I LKFIDT+S FGHGRFQT  +K  F   + 
Sbjct: 329 KGCCVGPKKRVVTLRQSLLTQTSRLALEEIKLKFIDTASIFGHGRFQTSLEKMRFYNRVT 388

Query: 112 K 110
           K
Sbjct: 389 K 389



 Score = 79.0 bits (186), Expect = 3e-15
 Identities = 61/163 (37%), Positives = 84/163 (51%), Gaps = 5/163 (3%)
 Frame = -1

Query: 749 IQLNGGTIRGQSEMGQRTSGEPIPVDSVFAQDEMIDCIGVTQGAKDTKVSLLVGTQRSYP 570
           IQ+NGGTI  + +       + IP+++VF +DEMID IGVT+G     V    G  R  P
Sbjct: 184 IQINGGTIAQKVDFAYSFFEKQIPIEAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTR-LP 242

Query: 569 VRHTRVLGKLPALELGILLGCRSL*LVLVRKVIITVLK*TRKSIVLXQGIHKKD---GKV 399
            +  R L K+  +  G     R         V  TV +  +        ++KK    GKV
Sbjct: 243 RKTHRGLRKVACI--GAWHPAR---------VSYTVARAGQNGYHHRTELNKKIYRLGKV 291

Query: 398 --IKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIQGLLHG 276
               + A TEYD +EK +TPMGGFPHYG V +D++MI+G   G
Sbjct: 292 GTEAHTAMTEYDRTEKDVTPMGGFPHYGIVKDDYLMIKGCCVG 334


>At5g06260.1 68418.m00700 nucleolar protein-related contains weak
           similarity to nucleolar protein C7C (GI:13540302)
           [Rattus norvegicus]
          Length = 424

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 18/61 (29%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
 Frame = -1

Query: 761 SHYGIQLNGGTIRGQSEMGQRTSGEPIPVDSVFAQDEMIDCIGVTQGA--KDTKVSLLVG 588
           +H+G+ ++    +GQ+     T G P    +   Q E+I+C G+ Q +  +DTK + + G
Sbjct: 342 NHFGLFISASFDQGQT-FECTTFGSPSLSKTSRIQPEVIECWGIVQASNEQDTKHNAMKG 400

Query: 587 T 585
           T
Sbjct: 401 T 401


>At5g46740.1 68418.m05758 ubiquitin-specific protease 21 (UBP21)
           identical to ubiquitin-specific protease 21 GI:11993482
           [Arabidopsis thaliana]
          Length = 732

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +1

Query: 652 SSWANTESTGIGSPDVLWPISLC 720
           SS A  +S G+  PDV WP S C
Sbjct: 508 SSKACNDSVGVSIPDVKWPDSCC 530


>At2g19740.1 68415.m02306 60S ribosomal protein L31 (RPL31A)
          Length = 119

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
 Frame = -3

Query: 624 RGKGYKG-VTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNK 448
           +GKG K  V +R +T  L R+ H    K     A    R  F +   G K      ++NK
Sbjct: 3   KGKGRKEEVVTREYTINLHRRLHSCTFKKKAPNAIKEIR-KFALKAMGTKDVRVDVKLNK 61

Query: 447 KIYRIGXRNPQK 412
           +I+  G R P +
Sbjct: 62  QIWSKGIRGPPR 73


>At2g13100.1 68415.m01436 glycerol-3-phosphate transporter, putative
           / glycerol 3-phosphate permease, putative similar to
           glycerol-3-phosphate transporter (glycerol 3-phosphate
           permease) [Homo sapiens] GI:7543982; contains Pfam
           profile PF00083: major facilitator superfamily protein
          Length = 493

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = +1

Query: 406 PSFLWIPXSNTIDFLVHFSTVMITFLTSTSYSERHPRRMPSS 531
           P+F   P  NT      F  +++  +T T+Y+  H  R P S
Sbjct: 10  PAFSLFPNLNTPHKTFTFHQILVLIITFTAYASFHASRKPPS 51


>At1g71400.1 68414.m08246 disease resistance family protein / LRR
           family protein contains leucine rich-repeat domains
           Pfam:PF00560, INTERPRO:IPR001611; similar to Hcr2-5D
           [Lycopersicon esculentum] gi|3894393|gb|AAC78596
          Length = 847

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 12/29 (41%), Positives = 13/29 (44%)
 Frame = -3

Query: 621 GKGYKGVTSRWHTKKLPRKTHKGLRKVAC 535
           G  Y      W T+K  RK HK L  V C
Sbjct: 817 GHFYTSHNHEWFTEKFGRKQHKALTSVKC 845


>At1g67420.1 68414.m07674 24 kDa vacuolar protein, putative similar
           to 24 kDa vacuolar protein VP24 [Ipomoea batatas]
           gi|5821406|dbj|BAA83809
          Length = 873

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 12/36 (33%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = +1

Query: 418 WIPXSNTIDFLVHFSTVMITFLTS-TSYSERHPRRM 522
           W+  S+ + FL+HF+ VM+   +    YS+  P+R+
Sbjct: 617 WLAKSSILKFLLHFTVVMLAVSSQFFPYSKDAPKRV 652


>At5g25070.1 68418.m02971 expressed protein
          Length = 736

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = -2

Query: 796 SNELLKQRQKKXHIMESNLTGVPFEDKVKWAREHLENL 683
           + ELLK+R  K  I++ N+T   F DK+ +  + +  L
Sbjct: 536 TRELLKERSSKKSIIQQNITS--FMDKIMFIEKRMPEL 571


>At5g22400.1 68418.m02613 rac GTPase activating protein, putative
           similar to rac GTPase activating protein 1 [Lotus
           japonicus] GI:3695059; contains Pfam profile PF00620:
           RhoGAP domain
          Length = 466

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 15/32 (46%), Positives = 20/32 (62%)
 Frame = -3

Query: 204 STSNSLTPRPSSVMVDSRRRLTRLHSWVHSRR 109
           S+S+S +P PSS+   SR   T L S  H+RR
Sbjct: 17  SSSSSSSPSPSSLSYASRSNATLLISSDHNRR 48


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,367,607
Number of Sequences: 28952
Number of extensions: 404006
Number of successful extensions: 1065
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1012
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1064
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1863090400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)