Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_B13
         (827 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0845 + 6866211-6867143                                           29   4.5  
08_02_1100 + 24303920-24304001,24304080-24304576,24304745-243048...    28   7.9  
01_06_0581 - 30386018-30386440                                         28   7.9  

>07_01_0845 + 6866211-6867143
          Length = 310

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 11/31 (35%), Positives = 13/31 (41%)
 Frame = -1

Query: 326 PPLRSLISNLSNTCDPTPLPEWSCEQSAWWG 234
           PPL +     S    P P P W   +  WWG
Sbjct: 63  PPLVARRDRKSGATPPPPPPWWPTAEEPWWG 93


>08_02_1100 +
           24303920-24304001,24304080-24304576,24304745-24304842,
           24304982-24305813,24306463-24306645,24306726-24307346
          Length = 770

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 11/22 (50%), Positives = 15/22 (68%), Gaps = 3/22 (13%)
 Frame = -1

Query: 311 LISNLSNTCDPTPLPE---WSC 255
           L+ ++SN CDP  LPE   W+C
Sbjct: 582 LLESVSNICDPAKLPEGSPWTC 603


>01_06_0581 - 30386018-30386440
          Length = 140

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +1

Query: 271 SGVGSQVLERLEMRLRSGGGGARRQ 345
           SG+  +V +R+E   R GGGG RR+
Sbjct: 31  SGIEVKVRKRVEKEARMGGGGRRRR 55


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,175,768
Number of Sequences: 37544
Number of extensions: 240279
Number of successful extensions: 839
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 811
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 838
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2279943096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)