Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_T7_B12
(805 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g54020.2 68414.m06155 myrosinase-associated protein, putative... 31 0.90
At5g18830.2 68418.m02238 squamosa promoter-binding protein-like ... 30 1.6
At3g44800.1 68416.m04826 meprin and TRAF homology domain-contain... 30 1.6
At3g53440.2 68416.m05898 expressed protein 30 2.1
At3g53440.1 68416.m05897 expressed protein 30 2.1
At1g35510.1 68414.m04407 expressed protein contains Pfam PF03138... 30 2.1
At5g41150.1 68418.m05002 repair endonuclease (RAD1) (UVH1) conta... 29 3.6
At5g65770.1 68418.m08276 nuclear matrix constituent protein-rela... 29 4.8
At1g64340.1 68414.m07291 hypothetical protein 28 8.3
At1g02050.1 68414.m00125 chalcone and stilbene synthase family p... 28 8.3
>At1g54020.2 68414.m06155 myrosinase-associated protein, putative
strong similarity to myrosinase-associated proteins
GI:1769968, GI:1769970, GI:1216389,GI:1216391 from
[Brassica napus]; contains InterPro Entry IPR001087
Lipolytic enzyme, G-D-S-L family
Length = 372
Score = 31.1 bits (67), Expect = 0.90
Identities = 15/36 (41%), Positives = 21/36 (58%)
Frame = -3
Query: 650 LACGSQAFIATLLFDPSMSALPIIAKQNSPSVGLFT 543
+ C S + + LL P + L I+ QN P+VGLFT
Sbjct: 1 MECSSVSVLGILLVFPLLHNLVTISGQNLPAVGLFT 36
>At5g18830.2 68418.m02238 squamosa promoter-binding protein-like 7
(SPL7) identical to squamosa promoter binding
protein-like 7 [Arabidopsis thaliana] GI:5931635;
contains Pfam profile PF03110: SBP domain
Length = 775
Score = 30.3 bits (65), Expect = 1.6
Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Frame = -2
Query: 513 TVVRQVSFTLLMACRCDSNTAQYERNRSFGHLVHALGRAAGGAKLPSAGL-CLNASKAEA 337
T+V+++ L+ C CD + N +H ++ +K P AGL C +A+
Sbjct: 632 TLVKKMEPDSLVHCTCDCDVRLLHENMDLASDIHRKHQSPIESKDPEAGLDCKERIQADC 691
Query: 336 SLAESGKD 313
S GK+
Sbjct: 692 SPDSGGKE 699
>At3g44800.1 68416.m04826 meprin and TRAF homology domain-containing
protein / MATH domain-containing protein
Length = 564
Score = 30.3 bits (65), Expect = 1.6
Identities = 18/58 (31%), Positives = 30/58 (51%)
Frame = +2
Query: 98 KSSTDYSEPRHRTELYPDLRSRDARVKKKTDSIDLRDPNGLRRRVSRFECETRLVKSH 271
K S + +PR R LY D + + + K+T S+D+ NG + S+ E R+ + H
Sbjct: 142 KESQEVIKPRKRMRLYGDGGAVSSHLHKETSSVDV---NGFQVLPSQAESVKRIFERH 196
>At3g53440.2 68416.m05898 expressed protein
Length = 512
Score = 29.9 bits (64), Expect = 2.1
Identities = 23/74 (31%), Positives = 34/74 (45%)
Frame = +2
Query: 95 RKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSIDLRDPNGLRRRVSRFECETRLVKSHC 274
RKS+ +P R+ L++RD++VK + D +P RR RLV S
Sbjct: 4 RKSTVVLPQPIRRSARLISLQNRDSQVKPRKDLGFGSEPTKKTRREVLRGLSKRLVYSSD 63
Query: 275 LEPPDSRGSTVSIS 316
DSR ++IS
Sbjct: 64 SPIEDSRSKKLNIS 77
>At3g53440.1 68416.m05897 expressed protein
Length = 512
Score = 29.9 bits (64), Expect = 2.1
Identities = 23/74 (31%), Positives = 34/74 (45%)
Frame = +2
Query: 95 RKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSIDLRDPNGLRRRVSRFECETRLVKSHC 274
RKS+ +P R+ L++RD++VK + D +P RR RLV S
Sbjct: 4 RKSTVVLPQPIRRSARLISLQNRDSQVKPRKDLGFGSEPTKKTRREVLRGLSKRLVYSSD 63
Query: 275 LEPPDSRGSTVSIS 316
DSR ++IS
Sbjct: 64 SPIEDSRSKKLNIS 77
>At1g35510.1 68414.m04407 expressed protein contains Pfam PF03138:
Plant protein family. The function of this family of
plant proteins is unknown; previously annotated as
'growth regulator protein -related' based on similarity
to axi 1 protein (GB:X80301) (GI:559920) from [Nicotiana
tabacum], which, due to scienitific fraud was retracted.
Retraction in: Schell J. EMBO J 1999 May 17;18(10):2908.
PMID:10400497.
Length = 568
Score = 29.9 bits (64), Expect = 2.1
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +1
Query: 592 ADIEGSKSNVAMNAWLPQASYPW 660
AD+ GS NV M AW P+ W
Sbjct: 122 ADVNGSSHNVLMEAWKPRVKSVW 144
>At5g41150.1 68418.m05002 repair endonuclease (RAD1) (UVH1) contains
Pfam PF02732 : ERCC4 domain; contains TIGRFAM TIGR00596:
DNA repair protein (rad1); almost identical to 5' repair
endonuclease (GI:8926611) [Arabidopsis thaliana]
Length = 956
Score = 29.1 bits (62), Expect = 3.6
Identities = 25/102 (24%), Positives = 43/102 (42%), Gaps = 2/102 (1%)
Frame = +2
Query: 32 GLSLNRSQHDAALPSTTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSIDLRDP 211
G S+ R +H+A + + + ++ +TD + + E + D S KK DP
Sbjct: 492 GSSVGRQEHEALMAAASSIRKLGKTTDMASGNNNPEPHVDKASCTKGKAKK-------DP 544
Query: 212 NGLRRRVSRFECETRLVKSHCLEPPDS--RGSTVSISLPDSA 331
LRR + +T K L P++ + + S S P A
Sbjct: 545 TSLRRSLRSCNKKTTNSKPEILPGPENEEKANEASTSAPQEA 586
>At5g65770.1 68418.m08276 nuclear matrix constituent protein-related
low similarity to nuclear matrix constituent protein 1
(NMCP1) [Daucus carota] GI:2190187
Length = 1042
Score = 28.7 bits (61), Expect = 4.8
Identities = 22/74 (29%), Positives = 36/74 (48%)
Frame = +2
Query: 89 QERKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSIDLRDPNGLRRRVSRFECETRLVKS 268
+E K+S D S+ H E + S A KK+ +S+ +D + +S E +++
Sbjct: 95 EEIKASVDESDLTHMREKSAYV-SALAEAKKREESLK-KDVGIAKECISSLEKTLHEMRA 152
Query: 269 HCLEPPDSRGSTVS 310
C E S GST+S
Sbjct: 153 ECAETKVSAGSTMS 166
>At1g64340.1 68414.m07291 hypothetical protein
Length = 265
Score = 27.9 bits (59), Expect = 8.3
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = -2
Query: 732 DCESTAYRSFSIKSF*QEVPEKLPPGITGLWQPSVHS 622
DCEST Y SF + SF +++ + + P + S
Sbjct: 124 DCESTLYDSFELNSFNRQLNSAISSSARSMSMPHLSS 160
>At1g02050.1 68414.m00125 chalcone and stilbene synthase family
protein Similar to rice chalcone synthase homolog,
gp|U90341|2507617 and anther specific protein,
gp|Y14507|2326772
Length = 395
Score = 27.9 bits (59), Expect = 8.3
Identities = 19/62 (30%), Positives = 26/62 (41%)
Frame = +2
Query: 8 FFFLSPGAGLSLNRSQHDAALPSTTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKT 187
F+ + PG LNR + L R++ DY T LY RD +KKK
Sbjct: 308 FWAVHPGGPAILNRLETKLKLEKEKLESSRRALVDYGNVSSNTILYVMEYMRD-ELKKKG 366
Query: 188 DS 193
D+
Sbjct: 367 DA 368
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,631,546
Number of Sequences: 28952
Number of extensions: 374855
Number of successful extensions: 934
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 912
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 934
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1824072800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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