Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_B08
         (819 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetyla...    26   0.31 
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    24   1.7  
EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetyla...    23   2.2  
EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetyla...    23   2.2  
U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           22   5.1  
AM292344-1|CAL23156.1|  291|Tribolium castaneum gustatory recept...    22   5.1  
AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    22   6.7  

>EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetylase
           1 protein.
          Length = 534

 Score = 26.2 bits (55), Expect = 0.31
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -1

Query: 261 CGHPQCVSRGLFCH 220
           CG   C+ RGLFC+
Sbjct: 124 CGDGNCIERGLFCN 137


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 12/29 (41%), Positives = 13/29 (44%)
 Frame = -3

Query: 115 RLGSXPWHC*SPWATGNHSPSGGPYARLP 29
           R G  P H   P  +G   P G PY R P
Sbjct: 57  RQGIPPHHYGGP-PSGGQPPQGMPYPRFP 84


>EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetylase
           2B protein.
          Length = 528

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 6/14 (42%), Positives = 11/14 (78%)
 Frame = -1

Query: 261 CGHPQCVSRGLFCH 220
           CG+ +C+ + LFC+
Sbjct: 116 CGNGECIDKELFCN 129


>EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetylase
           2A protein.
          Length = 535

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 6/14 (42%), Positives = 11/14 (78%)
 Frame = -1

Query: 261 CGHPQCVSRGLFCH 220
           CG+ +C+ + LFC+
Sbjct: 123 CGNGECIDKELFCN 136


>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +1

Query: 391 GNRSPSADPEVPNDP 435
           G  SP  DPE+P  P
Sbjct: 76  GTTSPEPDPEIPVAP 90


>AM292344-1|CAL23156.1|  291|Tribolium castaneum gustatory receptor
           candidate 23 protein.
          Length = 291

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -3

Query: 262 LRSSTVRFQRSFLPRTIRLWNELPST 185
           L    VRF +     T++LW++L ST
Sbjct: 79  LEQFIVRFMKYHFFGTLKLWSQLFST 104


>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 14/36 (38%), Positives = 16/36 (44%), Gaps = 2/36 (5%)
 Frame = +1

Query: 316 KNEMPV--SSRTIPQSTPHGTYGTKYRGNRSPSADP 417
           K E P   S R     TPHG+  +      SPSA P
Sbjct: 239 KKESPQMQSYRPTGNITPHGSNTSSLITTPSPSASP 274


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 218,806
Number of Sequences: 336
Number of extensions: 5496
Number of successful extensions: 18
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 22414104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)