Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_B08
         (819 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy...    30   0.34 
SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces ...    28   1.8  
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p...    27   3.2  
SPBC3B8.02 |php5||CCAAT-binding factor complex subunit Php5|Schi...    26   5.6  
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   7.4  
SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomy...    26   7.4  
SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10 |Schizos...    26   7.4  
SPAC25G10.08 |||translation initiation factor eIF3b |Schizosacch...    25   9.8  
SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr 1|||...    25   9.8  

>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 433

 Score = 30.3 bits (65), Expect = 0.34
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +2

Query: 329 RYHLEQFLRALPMEHTVQNTEGTEVPPQTQ 418
           RY LEQ L+  P+EH +  TE  + PP+ +
Sbjct: 85  RYGLEQQLKTNPLEHPILITEPFDNPPENR 114


>SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 632

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +2

Query: 407 PQTQRFQTIRQTGIIDNPNGPPLYGVKWKKLVF 505
           P + R Q +R  G+   PNG P Y  ++K +VF
Sbjct: 556 PNSSRLQKLRAPGLC--PNGSPNYRNRYKLIVF 586


>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 517

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = +1

Query: 346 IPQSTPHGTYGTKY-RGNRSPSADPEVPNDPSDRDYRQSERP 468
           I +  P G YG++  R  R   +D     +  +R YR+ ERP
Sbjct: 35  IGREDPRGHYGSERPRRRRRDESDFRRHRESRERSYREDERP 76


>SPBC3B8.02 |php5||CCAAT-binding factor complex subunit
           Php5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 415

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = +1

Query: 352 QSTPHGTYGTKYRGNRSPSADPEVPNDPSDRDYRQSERPSS 474
           QS+P G    +++GN  P+       DPS   Y  S RP S
Sbjct: 328 QSSPMGYQMPQFQGNMRPNMQQSQMFDPS--AYGMSRRPGS 366


>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 536

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 16/51 (31%), Positives = 27/51 (52%)
 Frame = -2

Query: 626 NAGSPQQSEAVLHAWTKAFAL*STSPASRGVLLSSLGRGSQIPASSI*LHT 474
           ++ SP  S +  HA + + +    S +S G+  SSL   S +P+SS   H+
Sbjct: 110 SSASPTSSSSS-HALSSSSSSLVASSSSSGMSSSSLSHSSSVPSSSSSYHS 159


>SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 22/98 (22%), Positives = 41/98 (41%), Gaps = 7/98 (7%)
 Frame = +1

Query: 202 SIAGWYVAKKTSGNALWMTAVAPGSMDELYSGGGRCDGKNEMPVSSRTIPQST-----PH 366
           +++G+Y+  + S NA      +  S++   +     +   E P ++  + Q       P 
Sbjct: 250 NVSGFYIENRASYNA----NASINSVEAAQNAAPNLNATTEQPKNTAEVAQGAASAKAPQ 305

Query: 367 GT--YGTKYRGNRSPSADPEVPNDPSDRDYRQSERPSS 474
            T   GT+   N  PS+   VP +  + +  QS   SS
Sbjct: 306 QTTQQGTQNSANAEPSSSASVPAEAPETEAEQSIDVSS 343


>SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1649

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 17/56 (30%), Positives = 27/56 (48%)
 Frame = -3

Query: 781 RSLRXRTPLSWRPXFQGVSLXXSESIGILGVDISSDVQFRSHLEGKAKLASKMLGV 614
           ++LR  +P+  +     + L  S  IG+ G  + S +  R   E K K ASK + V
Sbjct: 563 KNLRWLSPVETKYYCSDLLLDRSSEIGLDGTYLFSYIPERLFTEKKPKNASKEIAV 618


>SPAC25G10.08 |||translation initiation factor eIF3b
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 725

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 9/17 (52%), Positives = 14/17 (82%)
 Frame = -2

Query: 689 RHFERCPVSESFGRQSQ 639
           ++FE CPVS++ GR S+
Sbjct: 353 QNFEWCPVSDALGRDSK 369


>SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 709

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +3

Query: 234 LWKRTVDDRSGSR*YG*TLLRWRAVRW 314
           +WK  V+DRSG +  G T   W+   W
Sbjct: 558 VWKLLVNDRSGGKHEG-TFENWQLALW 583


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,818,161
Number of Sequences: 5004
Number of extensions: 89872
Number of successful extensions: 263
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 257
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 263
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 400438000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)