Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_T7_B08
(819 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1238 + 35646647-35646932,35647333-35647950,35648732-356490... 33 0.36
05_01_0521 + 4500268-4500283,4500364-4500680,4500999-4501094,450... 31 1.1
04_04_0161 + 23203786-23203848,23204141-23204180,23204865-232050... 29 4.4
04_03_1019 + 21759368-21760546 29 4.4
08_02_1091 + 24256025-24256190,24256806-24257978,24258066-242587... 29 5.9
07_03_1710 - 28903614-28903673,28904982-28905146,28905453-289056... 29 5.9
06_02_0206 + 13005863-13005966,13006918-13007080,13008534-130086... 29 5.9
04_03_0758 + 19322891-19323193,19323606-19323778,19324778-19326095 28 7.8
>01_06_1238 +
35646647-35646932,35647333-35647950,35648732-35649032,
35649137-35649416,35649715-35649822,35650088-35650366,
35650805-35650963
Length = 676
Score = 32.7 bits (71), Expect = 0.36
Identities = 24/89 (26%), Positives = 34/89 (38%), Gaps = 2/89 (2%)
Frame = +1
Query: 292 SGGGRCDGKNEMPVSSRTIPQSTPHGTYGTKYRGNRSPSADPEVPNDPSDRDYRQS--ER 465
S G ++ + + P P T G G +P+A P P SD +
Sbjct: 35 SAAGDAGSDSDAALDPQLPPLRLPASTSG----GGGAPAAPPASPGSSSDSASSSAFVSM 90
Query: 466 PSSVWSQMEEAGIWEPRPRDESSTPREAG 552
SS + G+W PR D SS+ E G
Sbjct: 91 RSSPSGMLNPYGVWSPRHSDTSSSEMEFG 119
>05_01_0521 +
4500268-4500283,4500364-4500680,4500999-4501094,
4501219-4501296,4501333-4501557,4502842-4502910,
4502946-4503200
Length = 351
Score = 31.1 bits (67), Expect = 1.1
Identities = 21/83 (25%), Positives = 40/83 (48%)
Frame = -3
Query: 733 GVSLXXSESIGILGVDISSDVQFRSHLEGKAKLASKMLGVLNRAKRYFTPGQRLLLYKAQ 554
G S+ + I + D + V++R ++KLA+ +LG ++ + PG R+L
Sbjct: 99 GESVYGEKRISVQNED-GTKVEYRVWNPFRSKLAAAVLGGVDNI--WIAPGTRVLYLGGA 155
Query: 553 VRPRVEYCFHLWAGAPKYQLLPF 485
V + + +P+Y +LPF
Sbjct: 156 SGTTVSHVSDIVGPSPRYAILPF 178
>04_04_0161 +
23203786-23203848,23204141-23204180,23204865-23205016,
23205270-23205406,23206356-23206396,23206500-23207098,
23207599-23207679,23208146-23208208,23209141-23209197
Length = 410
Score = 29.1 bits (62), Expect = 4.4
Identities = 11/28 (39%), Positives = 20/28 (71%)
Frame = +3
Query: 330 GIISNNSSEHSPWNIRYKIQREPKSLRR 413
G+ SN +E + ++R K+ R+PK++RR
Sbjct: 161 GLSSNGGAEQNGVDLREKLSRKPKNIRR 188
>04_03_1019 + 21759368-21760546
Length = 392
Score = 29.1 bits (62), Expect = 4.4
Identities = 20/61 (32%), Positives = 25/61 (40%), Gaps = 1/61 (1%)
Frame = -1
Query: 219 VPSGYGMSSPPRCFPSAMTCPSSNEACGEY*AVGSG-LALXPGIAKVHGRXVTTHHQVGR 43
VPS S C + M C E +GS L L PG K H R + ++GR
Sbjct: 137 VPSSASRSLRAVCGVNLMACHLKTGRLAECVELGSEVLGLDPGNVKAHYRRGQAYRELGR 196
Query: 42 M 40
M
Sbjct: 197 M 197
>08_02_1091 +
24256025-24256190,24256806-24257978,24258066-24258733,
24258994-24260065,24260241-24260563,24260647-24260835,
24261400-24261506,24262103-24262163,24262617-24262634
Length = 1258
Score = 28.7 bits (61), Expect = 5.9
Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
Frame = -1
Query: 303 PATGVEFIHTTWSHCGHPQCVSRGLFCHVPSGYGMSSPPRCFPS-AMTCPSSNEAC 139
P V+++ H VS G P + S+PP FPS A + S +AC
Sbjct: 677 PGADVKYVAVDDQILNHTDYVSSGCEVLNPENHPSSTPPSTFPSYASSDQQSQQAC 732
>07_03_1710 -
28903614-28903673,28904982-28905146,28905453-28905638,
28905784-28905927,28906281-28906460,28906559-28907215
Length = 463
Score = 28.7 bits (61), Expect = 5.9
Identities = 23/73 (31%), Positives = 29/73 (39%)
Frame = +1
Query: 328 PVSSRTIPQSTPHGTYGTKYRGNRSPSADPEVPNDPSDRDYRQSERPSSVWSQMEEAGIW 507
PVSS P + P T + P+ P PS +Q RP S + E W
Sbjct: 47 PVSSAA-PTAPPPKPSPTPPPASPPPAPTPPQTRPPSPPPQQQQPRPVSP-PPVAEPYYW 104
Query: 508 EPRPRDESSTPRE 546
P+P D PRE
Sbjct: 105 -PKPYDYGDAPRE 116
>06_02_0206 +
13005863-13005966,13006918-13007080,13008534-13008632,
13008704-13008817,13009094-13009254,13009746-13009827,
13009972-13010057,13011563-13011742,13011913-13012424,
13012844-13013478
Length = 711
Score = 28.7 bits (61), Expect = 5.9
Identities = 19/53 (35%), Positives = 25/53 (47%)
Frame = +1
Query: 388 RGNRSPSADPEVPNDPSDRDYRQSERPSSVWSQMEEAGIWEPRPRDESSTPRE 546
RG++SPS PE P D R SE S+V + E+ + P S P E
Sbjct: 312 RGDKSPSIKPEGAKQP---DQRSSEAASTV-TPFEQLALPAPASSSSSKPPVE 360
>04_03_0758 + 19322891-19323193,19323606-19323778,19324778-19326095
Length = 597
Score = 28.3 bits (60), Expect = 7.8
Identities = 16/50 (32%), Positives = 24/50 (48%)
Frame = -2
Query: 674 CPVSESFGRQSQVGVQNAGSPQQSEAVLHAWTKAFAL*STSPASRGVLLS 525
C E+ +Q + A PQQ++ V T A A + SPA RG ++
Sbjct: 94 CAEGEAAAQQPTLAPPPAQQPQQNQGVGFGGTGAGAATTVSPAPRGTTMA 143
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,942,769
Number of Sequences: 37544
Number of extensions: 693333
Number of successful extensions: 2006
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1910
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2006
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2244686244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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