Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_B03
         (882 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    25   0.79 
AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine recombi...    24   1.8  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    23   3.2  
AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.     23   4.2  
U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.     22   7.3  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    22   7.3  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           22   7.3  

>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 25.0 bits (52), Expect = 0.79
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +3

Query: 69  PRSTALPSADRGCSMDPLDCR 131
           P     PS+ R  S DPL+CR
Sbjct: 57  PGDVPTPSSPRSISEDPLNCR 77


>AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine
           recombinase protein.
          Length = 340

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = -1

Query: 273 LPEWSCEQSAWWGACGR 223
           L +++CE   WW  C R
Sbjct: 50  LKQYTCELKLWWEFCQR 66


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 5/13 (38%), Positives = 9/13 (69%)
 Frame = -1

Query: 270  PEWSCEQSAWWGA 232
            P+W+ + S WW +
Sbjct: 1033 PDWTTKPSTWWSS 1045


>AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.
          Length = 301

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +2

Query: 227 PHAPHHALCSHDHSGSGVRSQVLERLEMXLRSG 325
           P  PH+ L  HD  GS +++Q +  +E   RSG
Sbjct: 132 PAMPHN-LTRHD--GSVIKNQGMPTMEAIARSG 161


>U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.
          Length = 283

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -1

Query: 327 PPLRSXISNLSNTCDLTPLPEWSCE 253
           PP+ S  + L N  D+TP    +C+
Sbjct: 120 PPVTSSSNILQNLADITPNVTPNCD 144


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -1

Query: 327 PPLRSXISNLSNTCDLTPLPEWSCE 253
           PP+ S  + L N  D+TP    +C+
Sbjct: 120 PPVTSSSNILQNLADITPNVTPNCD 144


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -1

Query: 327 PPLRSXISNLSNTCDLTPLPEWSCE 253
           PP+ S  + L N  D+TP    +C+
Sbjct: 120 PPVTSSSNILQNLADITPNVTPNCD 144


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 110,962
Number of Sequences: 336
Number of extensions: 1520
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 24410188
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)