Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_T7_B02
(803 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P39023 Cluster: 60S ribosomal protein L3; n=228; Eukary... 219 5e-56
UniRef50_Q92901 Cluster: 60S ribosomal protein L3-like; n=44; Bi... 219 5e-56
UniRef50_Q6BEU5 Cluster: Putative uncharacterized protein rpl-3;... 188 1e-46
UniRef50_Q581Q2 Cluster: Ribosomal protein L3, putative; n=6; Tr... 157 4e-37
UniRef50_UPI0000503B42 Cluster: UPI0000503B42 related cluster; n... 139 7e-32
UniRef50_Q3LWC1 Cluster: Ribosomal protein L3; n=1; Bigelowiella... 130 5e-29
UniRef50_UPI000061854E Cluster: 60S ribosomal protein L3 (HIV-1 ... 123 5e-27
UniRef50_Q8TZZ8 Cluster: 50S ribosomal protein L3P; n=4; Thermoc... 111 3e-23
UniRef50_UPI0000D9B08A Cluster: PREDICTED: similar to 60S riboso... 85 2e-15
UniRef50_A7DSZ4 Cluster: Ribosomal protein L3; n=1; Candidatus N... 78 2e-13
UniRef50_Q8TY90 Cluster: 50S ribosomal protein L3P; n=13; Euryar... 78 2e-13
UniRef50_P54014 Cluster: 50S ribosomal protein L3P; n=6; Euryarc... 78 3e-13
UniRef50_Q99N25 Cluster: Ribosomal protein L3; n=2; Theria|Rep: ... 77 7e-13
UniRef50_Q673S9 Cluster: Ribosomal protein L3; n=1; uncultured m... 76 1e-12
UniRef50_P60458 Cluster: 50S ribosomal protein L3P; n=1; Nanoarc... 75 2e-12
UniRef50_A0RVX4 Cluster: 50S ribosomal protein L3; n=1; Cenarcha... 74 5e-12
UniRef50_Q2QAT1 Cluster: Ribosomal protein L3; n=1; uncultured m... 73 1e-11
UniRef50_Q97BX7 Cluster: 50S ribosomal protein L3P; n=4; Thermop... 73 1e-11
UniRef50_Q9HPD4 Cluster: 50S ribosomal protein L3P; n=4; Euryarc... 71 5e-11
UniRef50_Q0W1Y9 Cluster: 50S ribosomal protein L3P; n=4; Euryarc... 70 8e-11
UniRef50_Q9YFM2 Cluster: 50S ribosomal protein L3P; n=6; Thermop... 68 3e-10
UniRef50_A1RWR0 Cluster: 50S ribosomal protein L3; n=1; Thermofi... 66 1e-09
UniRef50_Q9UXA8 Cluster: 50S ribosomal protein L3P; n=5; Thermop... 60 8e-08
UniRef50_A3DNA4 Cluster: 50S ribosomal protein L3; n=1; Staphylo... 56 1e-06
UniRef50_UPI00015BB2A1 Cluster: LSU ribosomal protein L3P; n=1; ... 53 1e-05
UniRef50_Q7Z5Z5 Cluster: NPC-A-12; n=1; Homo sapiens|Rep: NPC-A-... 36 1.6
UniRef50_Q8IKJ3 Cluster: Putative uncharacterized protein; n=1; ... 35 2.1
UniRef50_O83219 Cluster: 50S ribosomal protein L3; n=2; Treponem... 35 2.1
UniRef50_Q2BFU2 Cluster: RTX toxins and related Ca2+-binding pro... 35 2.8
UniRef50_P09001 Cluster: Mitochondrial 39S ribosomal protein L3;... 34 3.6
UniRef50_Q890N9 Cluster: 50S ribosomal protein L3; n=32; Bacteri... 34 3.6
UniRef50_Q8I4X9 Cluster: Putative uncharacterized protein; n=1; ... 33 6.4
UniRef50_P49404 Cluster: Putative mitochondrial 39S ribosomal pr... 33 8.4
>UniRef50_P39023 Cluster: 60S ribosomal protein L3; n=228;
Eukaryota|Rep: 60S ribosomal protein L3 - Homo sapiens
(Human)
Length = 403
Score = 219 bits (536), Expect = 5e-56
Identities = 97/119 (81%), Positives = 109/119 (91%)
Frame = -2
Query: 625 KGKGYKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKK 446
KGKGYKGVTSRWHTKKLPRKTH+GLRKVACIGAWHP+RV+F+VARAGQKGYHHRTE+NKK
Sbjct: 224 KGKGYKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKK 283
Query: 445 IYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMXQGLLHGT*K 269
IY+IGQG KDGK+IKNNAST+YDLS+KSI P+GGF HYGEV NDFVM +G + GT K
Sbjct: 284 IYKIGQGYLIKDGKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGTKK 342
Score = 106 bits (255), Expect = 6e-22
Identities = 50/67 (74%), Positives = 57/67 (85%)
Frame = -3
Query: 294 KGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLK 115
KGC +G KKR++TLRKSL V TKR ALEKI+LKFIDT+SKFGHGRFQT +K AFMG LK
Sbjct: 334 KGCVVGTKKRVLTLRKSLLVQTKRRALEKIDLKFIDTTSKFGHGRFQTMEEKKAFMGPLK 393
Query: 114 KDRIREE 94
KDRI +E
Sbjct: 394 KDRIAKE 400
Score = 39.1 bits (87), Expect = 0.13
Identities = 20/44 (45%), Positives = 27/44 (61%)
Frame = -1
Query: 749 IQLXGVPSRXK*NEPENILEKPIPVDSVFAQDEMIDCIGVXQGQ 618
IQ+ G K + LE+ +PV+ VF QDEMID IGV +G+
Sbjct: 183 IQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIGVTKGK 226
>UniRef50_Q92901 Cluster: 60S ribosomal protein L3-like; n=44;
Bilateria|Rep: 60S ribosomal protein L3-like - Homo
sapiens (Human)
Length = 407
Score = 219 bits (536), Expect = 5e-56
Identities = 102/168 (60%), Positives = 127/168 (75%), Gaps = 1/168 (0%)
Frame = -2
Query: 769 KXAHIMESNLXGYHRGQS-EMSQRTFWRNLSLSILCLPKMK*LTALVSXKGKGYKGVTSR 593
K AHIME L G + +Q + + + + + + + + KG+G KGVTSR
Sbjct: 176 KKAHIMEIQLNGGTVAEKVAWAQARLEKQVPVHSV-FSQSEVIDVIAVTKGRGVKGVTSR 234
Query: 592 WHTKKLPRKTHKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKK 413
WHTKKLPRKTHKGLRKVACIGAWHP+RV ++ARAGQKGYHHRTE+NKKI+RIG+G H +
Sbjct: 235 WHTKKLPRKTHKGLRKVACIGAWHPARVGCSIARAGQKGYHHRTELNKKIFRIGRGPHME 294
Query: 412 DGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMXQGLLHGT*K 269
DGK++KNNAST YD++ KSITP+GGFPHYGEVNNDFVM +G + GT K
Sbjct: 295 DGKLVKNNASTSYDVTAKSITPLGGFPHYGEVNNDFVMLKGCIAGTKK 342
Score = 91.9 bits (218), Expect = 2e-17
Identities = 44/66 (66%), Positives = 49/66 (74%)
Frame = -3
Query: 294 KGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLK 115
KGC G KKR+ITLRKSL VH R A+E I LKFIDT+SKFGHGRFQT +K AFMG K
Sbjct: 334 KGCIAGTKKRVITLRKSLLVHHSRQAVENIELKFIDTTSKFGHGRFQTAQEKRAFMGPQK 393
Query: 114 KDRIRE 97
K +E
Sbjct: 394 KHLEKE 399
>UniRef50_Q6BEU5 Cluster: Putative uncharacterized protein rpl-3;
n=1; Caenorhabditis elegans|Rep: Putative
uncharacterized protein rpl-3 - Caenorhabditis elegans
Length = 353
Score = 188 bits (458), Expect = 1e-46
Identities = 83/116 (71%), Positives = 99/116 (85%)
Frame = -2
Query: 625 KGKGYKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKK 446
+G G+KGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRV+FTVARAGQKG+HHRT +N K
Sbjct: 176 RGHGFKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVAFTVARAGQKGFHHRTIINNK 235
Query: 445 IYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMXQGLLHG 278
IYRIG+ ++G KNN STE+DL++K+ITPMGGFP YG VN D++M +G + G
Sbjct: 236 IYRIGKSALTEEG---KNNGSTEFDLTQKTITPMGGFPRYGIVNQDYIMLRGAVLG 288
Score = 96.3 bits (229), Expect = 8e-19
Identities = 46/66 (69%), Positives = 53/66 (80%)
Frame = -3
Query: 294 KGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLK 115
+G +GPKKR+ITLRKSL TKR A EKINLK+IDTSSK GHGRFQT A+K AFMG LK
Sbjct: 283 RGAVLGPKKRLITLRKSLITQTKRVAHEKINLKWIDTSSKTGHGRFQTTAEKRAFMGKLK 342
Query: 114 KDRIRE 97
+D + E
Sbjct: 343 RDFLAE 348
>UniRef50_Q581Q2 Cluster: Ribosomal protein L3, putative; n=6;
Trypanosomatidae|Rep: Ribosomal protein L3, putative -
Trypanosoma brucei
Length = 480
Score = 157 bits (380), Expect = 4e-37
Identities = 71/116 (61%), Positives = 86/116 (74%)
Frame = -2
Query: 625 KGKGYKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKK 446
KG G+ GV RW LPRKTH+GLRKVACIGAWHPSRV +TVARAGQ GYHHRT +NKK
Sbjct: 278 KGHGFTGVVKRWGVACLPRKTHRGLRKVACIGAWHPSRVMYTVARAGQHGYHHRTHLNKK 337
Query: 445 IYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMXQGLLHG 278
IY++G+ + + N A+T YDL+ K+ITPMGGF YG V ND+VM +G + G
Sbjct: 338 IYQLGRAVSME-----PNQATTAYDLTAKTITPMGGFVGYGTVRNDYVMLKGSVAG 388
Score = 86.6 bits (205), Expect = 6e-16
Identities = 40/67 (59%), Positives = 48/67 (71%)
Frame = -3
Query: 294 KGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLK 115
KG GP++R+ITLR+ + T R EKI LKFIDTSSK GHGRFQT +K+ + G LK
Sbjct: 383 KGSVAGPRRRVITLRRPMAPQTSRKLTEKITLKFIDTSSKIGHGRFQTKKEKSQWYGPLK 442
Query: 114 KDRIREE 94
KDRIR E
Sbjct: 443 KDRIRRE 449
>UniRef50_UPI0000503B42 Cluster: UPI0000503B42 related cluster; n=2;
Rattus norvegicus|Rep: UPI0000503B42 UniRef100 entry -
Rattus norvegicus
Length = 380
Score = 139 bits (337), Expect = 7e-32
Identities = 66/112 (58%), Positives = 82/112 (73%)
Frame = -2
Query: 625 KGKGYKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKK 446
KG GYKGVT + P + +G K+ C+GAWHP+RV+F+VA+ GQKGYHH + NKK
Sbjct: 204 KGNGYKGVTRVDIQRNCPERPIEGCPKL-CVGAWHPARVTFSVAQVGQKGYHHNGD-NKK 261
Query: 445 IYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMXQG 290
I +IGQG KDGK+IKNNA TEY LS+KSI +GGF HYGEV NDF+ +G
Sbjct: 262 ICKIGQGYLIKDGKLIKNNAPTEYHLSDKSINLLGGFVHYGEVTNDFIRLKG 313
Score = 58.4 bits (135), Expect = 2e-07
Identities = 33/67 (49%), Positives = 42/67 (62%)
Frame = -3
Query: 294 KGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLK 115
KGC + KK + T+ K L V T + AL+KI+ K DT+ K GHG FQT K AF+G LK
Sbjct: 312 KGCAVRTKKHL-TICKYLLVQTIQWALKKIDPKLNDTTYKVGHGCFQTTEGKRAFIGPLK 370
Query: 114 KDRIREE 94
K+ EE
Sbjct: 371 KECTAEE 377
>UniRef50_Q3LWC1 Cluster: Ribosomal protein L3; n=1; Bigelowiella
natans|Rep: Ribosomal protein L3 - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 370
Score = 130 bits (313), Expect = 5e-29
Identities = 64/126 (50%), Positives = 86/126 (68%)
Frame = -2
Query: 646 LTALVSXKGKGYKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSFTVARAGQKGYHH 467
+ A+ KG G KGV SRW +LPRKTH+GLRKVACIG W PSRV++T++RAGQKGYH
Sbjct: 199 IDAIGITKGHGTKGVVSRWGITRLPRKTHRGLRKVACIGPWTPSRVAWTISRAGQKGYHK 258
Query: 466 RTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMXQGL 287
RT NKKIY+IG +++ N+ S D KS+ MGGF +G +NND+++ +G
Sbjct: 259 RTLFNKKIYKIGS---EENFSYYSNSLS---DSIVKSVNCMGGFKKFGFINNDYLIIKGS 312
Query: 286 LHGT*K 269
+ G+ K
Sbjct: 313 MTGSSK 318
Score = 55.2 bits (127), Expect = 2e-06
Identities = 27/56 (48%), Positives = 36/56 (64%)
Frame = -3
Query: 294 KGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFM 127
KG G KR I LRK+++ EKI LK++DTSSK GHGR+++ ADK + M
Sbjct: 310 KGSMTGSSKRPILLRKNIKNKISSVITEKIILKYVDTSSKRGHGRYESSADKFSKM 365
>UniRef50_UPI000061854E Cluster: 60S ribosomal protein L3 (HIV-1 TAR
RNA-binding protein B) (TARBP-B).; n=1; Bos taurus|Rep:
60S ribosomal protein L3 (HIV-1 TAR RNA-binding protein
B) (TARBP-B). - Bos Taurus
Length = 340
Score = 123 bits (297), Expect = 5e-27
Identities = 72/167 (43%), Positives = 104/167 (62%)
Frame = -2
Query: 769 KXAHIMESNLXGYHRGQSEMSQRTFWRNLSLSILCLPKMK*LTALVSXKGKGYKGVTSRW 590
K AH+ ES + + + + + + + ++ + +++ L + + KGK YKG++S W
Sbjct: 133 KKAHLTESQVNRGPVAKLDWAHKKLEQQVPVNHIF--RVRRLFVIGTTKGKHYKGISSHW 190
Query: 589 HTKKLPRKTHKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKD 410
+TKK+P KTH+ + ACI W +VA A QKG HH T +NKKIY+IGQG K+
Sbjct: 191 YTKKVPWKTHQEFHEAACI--WD----GLSVAWARQKGCHHCT-INKKIYKIGQGYLIKN 243
Query: 409 GKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMXQGLLHGT*K 269
GK+IKNNAST+Y KSI+P+GG H G+V NDFVM + L GT K
Sbjct: 244 GKIIKNNASTDY---TKSISPLGGCIHCGKVTNDFVMLKDCLVGTKK 287
Score = 81.0 bits (191), Expect = 3e-14
Identities = 36/62 (58%), Positives = 46/62 (74%)
Frame = -3
Query: 294 KGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLK 115
K C +G KKR+++L KSL + TK+ L+K+N KFIDT+SKFGHG FQ +K FMG LK
Sbjct: 279 KDCLVGTKKRVLSLCKSLLMRTKQQTLQKVNFKFIDTTSKFGHGCFQIVGEKKGFMGPLK 338
Query: 114 KD 109
KD
Sbjct: 339 KD 340
>UniRef50_Q8TZZ8 Cluster: 50S ribosomal protein L3P; n=4;
Thermococcaceae|Rep: 50S ribosomal protein L3P -
Pyrococcus furiosus
Length = 365
Score = 111 bits (266), Expect = 3e-23
Identities = 59/126 (46%), Positives = 76/126 (60%)
Frame = -2
Query: 646 LTALVSXKGKGYKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSFTVARAGQKGYHH 467
L + KGKG +G RW K K KG RKV IG WHP+RV +TV AGQ G+HH
Sbjct: 219 LDVIAVTKGKGTQGPVKRWGIKLRAHKDSKGRRKVGSIGPWHPARVMWTVPMAGQMGFHH 278
Query: 466 RTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMXQGL 287
RTE+NK++ IG+ +GK +K + +TE + ITP GGFPHYG V +DF+M G
Sbjct: 279 RTELNKRLIAIGE-----NGK-LKLDENTEIE-----ITPKGGFPHYGIVRSDFMMIAGS 327
Query: 286 LHGT*K 269
+ G K
Sbjct: 328 VPGAIK 333
>UniRef50_UPI0000D9B08A Cluster: PREDICTED: similar to 60S ribosomal
protein L3 (L4); n=1; Macaca mulatta|Rep: PREDICTED:
similar to 60S ribosomal protein L3 (L4) - Macaca
mulatta
Length = 153
Score = 85.0 bits (201), Expect = 2e-15
Identities = 41/63 (65%), Positives = 50/63 (79%)
Frame = -3
Query: 282 MGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKDRI 103
+G KK+++TL KS V TK ALEKI+LKFIDT+SKFGHGRFQT +K AFMG LKKD+
Sbjct: 88 VGTKKQVLTLCKSSLVQTKWRALEKIDLKFIDTTSKFGHGRFQTIGEKKAFMGPLKKDQT 147
Query: 102 REE 94
+E
Sbjct: 148 AKE 150
>UniRef50_A7DSZ4 Cluster: Ribosomal protein L3; n=1; Candidatus
Nitrosopumilus maritimus SCM1|Rep: Ribosomal protein L3
- Candidatus Nitrosopumilus maritimus SCM1
Length = 331
Score = 78.2 bits (184), Expect = 2e-13
Identities = 44/116 (37%), Positives = 64/116 (55%)
Frame = -2
Query: 625 KGKGYKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKK 446
KGKG++GV RW+ KK K+ K +R+V +G P V +TV RAGQ G+H R E +K+
Sbjct: 204 KGKGWQGVLKRWNVKKKQHKSRKTVREVGSLGPISPQSVMYTVPRAGQFGFHQRVEYDKR 263
Query: 445 IYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMXQGLLHG 278
I +G +T+ D + I P GGF H+G V DF++ +G + G
Sbjct: 264 IMIMG---------------NTDDD--KLKINPDGGFKHFGLVKGDFIVLKGSVPG 302
>UniRef50_Q8TY90 Cluster: 50S ribosomal protein L3P; n=13;
Euryarchaeota|Rep: 50S ribosomal protein L3P -
Methanopyrus kandleri
Length = 361
Score = 78.2 bits (184), Expect = 2e-13
Identities = 48/118 (40%), Positives = 62/118 (52%), Gaps = 2/118 (1%)
Frame = -2
Query: 625 KGKGYKGVTSRWHTKKLPRKTHKGL--RKVACIGAWHPSRVSFTVARAGQKGYHHRTEMN 452
KGKG++GV RW RKT + R + IG PSRV +TV AGQ GYH RTE N
Sbjct: 209 KGKGFQGVVKRWGVTIQDRKTQRKQKGRHIGSIGPITPSRVRWTVPMAGQVGYHQRTEHN 268
Query: 451 KKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMXQGLLHG 278
K+I +IG+ DG + +TP GGF +YG V D++M G + G
Sbjct: 269 KRILKIGE-----DG---------------EEVTPRGGFVNYGVVRGDYIMIHGTVPG 306
>UniRef50_P54014 Cluster: 50S ribosomal protein L3P; n=6;
Euryarchaeota|Rep: 50S ribosomal protein L3P -
Methanococcus jannaschii
Length = 335
Score = 77.8 bits (183), Expect = 3e-13
Identities = 46/118 (38%), Positives = 61/118 (51%), Gaps = 2/118 (1%)
Frame = -2
Query: 625 KGKGYKGVTSRWHTK-KLPRKTHKGL-RKVACIGAWHPSRVSFTVARAGQKGYHHRTEMN 452
KGKG++G RW K + + KG+ R V IG W P V ++V GQ GYH RTE N
Sbjct: 203 KGKGFQGQVKRWGVKIQFGKHARKGVGRHVGSIGPWQPKMVMWSVPMPGQMGYHQRTEYN 262
Query: 451 KKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMXQGLLHG 278
K+I +IG NN ITP GGF HYG + N++V+ +G + G
Sbjct: 263 KRILKIG------------NNGD--------EITPKGGFLHYGVIRNNYVVLKGSVQG 300
>UniRef50_Q99N25 Cluster: Ribosomal protein L3; n=2; Theria|Rep:
Ribosomal protein L3 - Mus musculus (Mouse)
Length = 67
Score = 76.6 bits (180), Expect = 7e-13
Identities = 33/47 (70%), Positives = 40/47 (85%)
Frame = -2
Query: 409 GKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMXQGLLHGT*K 269
GK+IKNNAST+YDLS+KSI P+GGF HYGEV NDF+M +G + GT K
Sbjct: 1 GKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFIMLKGCVVGTKK 47
Score = 46.8 bits (106), Expect = 6e-04
Identities = 21/29 (72%), Positives = 24/29 (82%)
Frame = -3
Query: 294 KGCCMGPKKRIITLRKSLRVHTKRAALEK 208
KGC +G KKR++TLRKSL V TKR ALEK
Sbjct: 39 KGCVVGTKKRVLTLRKSLLVQTKRRALEK 67
>UniRef50_Q673S9 Cluster: Ribosomal protein L3; n=1; uncultured
marine group II euryarchaeote DeepAnt-JyKC7|Rep:
Ribosomal protein L3 - uncultured marine group II
euryarchaeote DeepAnt-JyKC7
Length = 358
Score = 75.8 bits (178), Expect = 1e-12
Identities = 44/116 (37%), Positives = 61/116 (52%)
Frame = -2
Query: 625 KGKGYKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKK 446
KGKG++GV R+ K L K K R++ +G + V T+ +AGQ GYH RTE+NK+
Sbjct: 228 KGKGWQGVIKRFGVKLLSHKNSKRRRQIGNMGDFGTGYVRKTIRQAGQMGYHKRTELNKR 287
Query: 445 IYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMXQGLLHG 278
I RI + E +TP GGF HYGEV N +++ +G L G
Sbjct: 288 ILRIS-------------------NPGESDVTPAGGFLHYGEVTNPYMVLEGSLPG 324
>UniRef50_P60458 Cluster: 50S ribosomal protein L3P; n=1;
Nanoarchaeum equitans|Rep: 50S ribosomal protein L3P -
Nanoarchaeum equitans
Length = 321
Score = 75.4 bits (177), Expect = 2e-12
Identities = 35/75 (46%), Positives = 48/75 (64%)
Frame = -2
Query: 625 KGKGYKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKK 446
KGKG++GV R+H + K+ KG+RKV IG+ P R+ TV GQ GYH RTE NK
Sbjct: 196 KGKGFQGVIKRFHVHRRQHKSEKGVRKVGAIGSRGPGRIFPTVPMPGQMGYHRRTEYNKL 255
Query: 445 IYRIGQGIHKKDGKV 401
I +IG+ ++ + G V
Sbjct: 256 IIKIGEPLNVEGGWV 270
>UniRef50_A0RVX4 Cluster: 50S ribosomal protein L3; n=1; Cenarchaeum
symbiosum|Rep: 50S ribosomal protein L3 - Cenarchaeum
symbiosum
Length = 328
Score = 73.7 bits (173), Expect = 5e-12
Identities = 40/117 (34%), Positives = 62/117 (52%)
Frame = -2
Query: 625 KGKGYKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKK 446
KGKG++GV R K+ K+ K +R++ +G P V +TV RAGQ G+H R E NK+
Sbjct: 202 KGKGWQGVIQRMGAKRKQHKSRKTVRELGSLGPISPQNVMYTVPRAGQMGFHQRIEYNKR 261
Query: 445 IYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMXQGLLHGT 275
I +G G+ + +I P GG+ H+G V D+++ +G + GT
Sbjct: 262 IMAVGSA-----GE-------------DDAINPSGGYKHFGMVKGDYIVLKGSVPGT 300
>UniRef50_Q2QAT1 Cluster: Ribosomal protein L3; n=1; uncultured
marine group II euryarchaeote HF70_59C08|Rep: Ribosomal
protein L3 - uncultured marine group II euryarchaeote
HF70_59C08
Length = 338
Score = 72.5 bits (170), Expect = 1e-11
Identities = 47/116 (40%), Positives = 59/116 (50%)
Frame = -2
Query: 625 KGKGYKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKK 446
KG G +GV R+ K L K K R++ +G + V T+ +AGQ GYH RTE NK+
Sbjct: 208 KGYGNQGVVRRFGVKLLSHKNSKRRRQIGNMGDFGTGYVRKTIRQAGQTGYHQRTEYNKR 267
Query: 445 IYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMXQGLLHG 278
I RI A E E ITP GGF HYGEV N +++ QG L G
Sbjct: 268 ILRI---------------AGEE----ESQITPAGGFLHYGEVKNHYMIIQGSLPG 304
>UniRef50_Q97BX7 Cluster: 50S ribosomal protein L3P; n=4;
Thermoplasmatales|Rep: 50S ribosomal protein L3P -
Thermoplasma volcanium
Length = 331
Score = 72.5 bits (170), Expect = 1e-11
Identities = 44/116 (37%), Positives = 57/116 (49%)
Frame = -2
Query: 625 KGKGYKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKK 446
KGKG+ G R+ K LPRK K R + +G WHP V TV +AGQ GY RT N +
Sbjct: 199 KGKGFTGHVQRFGVKLLPRKNRKHRRMIGTLGPWHPDWVRNTVPQAGQMGYQQRTISNVR 258
Query: 445 IYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMXQGLLHG 278
+ + +G +A T I GGF HYG V ND+V+ G + G
Sbjct: 259 VLKYSKG----------EDADT--------INVRGGFLHYGLVKNDYVLLFGSVPG 296
>UniRef50_Q9HPD4 Cluster: 50S ribosomal protein L3P; n=4;
Euryarchaeota|Rep: 50S ribosomal protein L3P -
Halobacterium salinarium (Halobacterium halobium)
Length = 335
Score = 70.5 bits (165), Expect = 5e-11
Identities = 43/118 (36%), Positives = 60/118 (50%), Gaps = 2/118 (1%)
Frame = -2
Query: 625 KGKGYKGVTSRWHTKKLPRK-THKGLRK-VACIGAWHPSRVSFTVARAGQKGYHHRTEMN 452
KGKG +G RW +K K +G R+ + +G W+PSRV TV + GQ GYH RTE+N
Sbjct: 205 KGKGTQGPVKRWGVQKRKGKHARQGWRRRIGNLGPWNPSRVRSTVPQQGQTGYHQRTELN 264
Query: 451 KKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMXQGLLHG 278
K++ I G TP GGFP+YGEV+ + + +G + G
Sbjct: 265 KRLIDINDG---------------------DEPTPDGGFPNYGEVDGPYTLVKGSVPG 301
>UniRef50_Q0W1Y9 Cluster: 50S ribosomal protein L3P; n=4;
Euryarchaeota|Rep: 50S ribosomal protein L3P -
Uncultured methanogenic archaeon RC-I
Length = 337
Score = 69.7 bits (163), Expect = 8e-11
Identities = 43/118 (36%), Positives = 61/118 (51%), Gaps = 2/118 (1%)
Frame = -2
Query: 625 KGKGYKGVTSRWHTKKLPRKTHKGLRK--VACIGAWHPSRVSFTVARAGQKGYHHRTEMN 452
KG G +G RW RK + +K V +G W+P R+ + V + GQ GYH RTE N
Sbjct: 206 KGYGTQGPVVRWGIATQKRKHARTGKKRHVGNLGPWNPHRIRWQVPQLGQTGYHQRTEYN 265
Query: 451 KKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMXQGLLHG 278
K+I ++G D +E+ ITP GGF HYG + ND++M +G + G
Sbjct: 266 KRILKMG-------------------DKAEE-ITPAGGFLHYGLIRNDYIMLKGSIPG 303
>UniRef50_Q9YFM2 Cluster: 50S ribosomal protein L3P; n=6;
Thermoprotei|Rep: 50S ribosomal protein L3P - Aeropyrum
pernix
Length = 344
Score = 67.7 bits (158), Expect = 3e-10
Identities = 49/122 (40%), Positives = 61/122 (50%), Gaps = 3/122 (2%)
Frame = -2
Query: 625 KGKGYKGVTSRWHTKKLPR--KTHKGLRKVACIGAWHPSRVSF-TVARAGQKGYHHRTEM 455
KGKG++GV RW K+LPR K KG R+ IGA R +F +AGQ G+H RTE
Sbjct: 210 KGKGFQGVIKRWGVKELPRWHKHRKGSRR---IGARSHGRSTFWETPQAGQTGFHRRTEY 266
Query: 454 NKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMXQGLLHGT 275
NK+I I +K +TP GGF YG V + FVM G + GT
Sbjct: 267 NKRILMIDDDGYK--------------------VTPAGGFLRYGVVRSTFVMLSGSIPGT 306
Query: 274 *K 269
K
Sbjct: 307 PK 308
>UniRef50_A1RWR0 Cluster: 50S ribosomal protein L3; n=1; Thermofilum
pendens Hrk 5|Rep: 50S ribosomal protein L3 -
Thermofilum pendens (strain Hrk 5)
Length = 334
Score = 65.7 bits (153), Expect = 1e-09
Identities = 41/121 (33%), Positives = 63/121 (52%), Gaps = 2/121 (1%)
Frame = -2
Query: 625 KGKGYKGVTSRWHTKKLPR--KTHKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMN 452
KGKG++G R+ +++PR K KG ++ +G P+ + F GQ G+H RTE N
Sbjct: 201 KGKGFQGSVKRFGVEEMPRWHKHRKGHSRIGSVGPQKPA-IMFYTPFPGQLGFHQRTEYN 259
Query: 451 KKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMXQGLLHGT* 272
K+I ++G D + S K I P GG+PHYG V + F++ +G + G
Sbjct: 260 KRILKVG------DAE------------SLKEINPPGGWPHYGLVRSQFIIVEGSVPGAV 301
Query: 271 K 269
K
Sbjct: 302 K 302
>UniRef50_Q9UXA8 Cluster: 50S ribosomal protein L3P; n=5;
Thermoprotei|Rep: 50S ribosomal protein L3P - Sulfolobus
solfataricus
Length = 351
Score = 59.7 bits (138), Expect = 8e-08
Identities = 44/121 (36%), Positives = 58/121 (47%), Gaps = 2/121 (1%)
Frame = -2
Query: 625 KGKGYKGVTSRWHTKKLPR--KTHKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMN 452
KGKG+ GV R+ +LPR K KG RK+ G S+T + GQ G+H RTE N
Sbjct: 222 KGKGFAGVIKRYSVVELPRWHKHRKGSRKIGTRGP-SLGTPSYT-PQPGQLGFHRRTEYN 279
Query: 451 KKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMXQGLLHGT* 272
K+I +IG K I P GGF YG V N +V+ +G + G+
Sbjct: 280 KRIIKIGD--------------------EPKEINPAGGFVRYGIVRNTYVLLEGSILGSK 319
Query: 271 K 269
K
Sbjct: 320 K 320
>UniRef50_A3DNA4 Cluster: 50S ribosomal protein L3; n=1;
Staphylothermus marinus F1|Rep: 50S ribosomal protein L3
- Staphylothermus marinus (strain ATCC 43588 / DSM 3639
/ F1)
Length = 395
Score = 55.6 bits (128), Expect = 1e-06
Identities = 42/119 (35%), Positives = 59/119 (49%), Gaps = 3/119 (2%)
Frame = -2
Query: 625 KGKGYKGVTSRWHTKKLPR--KTHKGLRKVACIGAWHPSRVSFT-VARAGQKGYHHRTEM 455
KGKG++GV R+ K+LPR K KG RK IG+ P + + + GQ G+H RTE
Sbjct: 264 KGKGFQGVIKRFGVKELPRWHKHRKGSRK---IGSRSPGFGTMSETPQPGQMGFHRRTEY 320
Query: 454 NKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMXQGLLHG 278
NK+I +IG ++ +TP GGF YG V ++M G + G
Sbjct: 321 NKRIIKIG--------------------INGWEVTPKGGFLGYGIVYGPYIMLHGSIIG 359
>UniRef50_UPI00015BB2A1 Cluster: LSU ribosomal protein L3P; n=1;
Ignicoccus hospitalis KIN4/I|Rep: LSU ribosomal protein
L3P - Ignicoccus hospitalis KIN4/I
Length = 358
Score = 52.8 bits (121), Expect = 1e-05
Identities = 39/118 (33%), Positives = 57/118 (48%), Gaps = 2/118 (1%)
Frame = -2
Query: 625 KGKGYKGVTSRWHTKKLPR--KTHKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMN 452
KGKG++GV R+ K+LP+ K KG R+V +W S+ V + GQ GYH RT+ N
Sbjct: 227 KGKGFQGVIKRFGVKELPKWHKHRKGSRRVGA-RSWGKGTSSY-VPQPGQMGYHRRTDYN 284
Query: 451 KKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMXQGLLHG 278
K++ I K I GG+ HYG V + +V+ +G + G
Sbjct: 285 KRVLMISDDPSK--------------------INVEGGWLHYGLVKSKYVVLKGSVFG 322
>UniRef50_Q7Z5Z5 Cluster: NPC-A-12; n=1; Homo sapiens|Rep: NPC-A-12
- Homo sapiens (Human)
Length = 103
Score = 35.5 bits (78), Expect = 1.6
Identities = 19/41 (46%), Positives = 22/41 (53%)
Frame = -1
Query: 242 CVCIQRGLH*KRSTSNSLTPRPSSVMVDSRRRLTRLHSWVH 120
C C + G +R T +SLTP PS M SR R HSW H
Sbjct: 63 CWCRRSGGLWRRLTLSSLTPPPSLAMAASRPWRRRKHSWDH 103
>UniRef50_Q8IKJ3 Cluster: Putative uncharacterized protein; n=1;
Plasmodium falciparum 3D7|Rep: Putative uncharacterized
protein - Plasmodium falciparum (isolate 3D7)
Length = 93
Score = 35.1 bits (77), Expect = 2.1
Identities = 16/34 (47%), Positives = 20/34 (58%)
Frame = +1
Query: 1 FFFFFFALSNVYFHGLHLRLRSSRWGCGSRSFFA 102
FFFFFF + N YF+ L L ++ GCG FA
Sbjct: 19 FFFFFFVVYNDYFNEPELPLDENKKGCGQFKCFA 52
>UniRef50_O83219 Cluster: 50S ribosomal protein L3; n=2;
Treponema|Rep: 50S ribosomal protein L3 - Treponema
pallidum
Length = 208
Score = 35.1 bits (77), Expect = 2.1
Identities = 32/107 (29%), Positives = 44/107 (41%), Gaps = 5/107 (4%)
Frame = -2
Query: 679 LSILCLPKMK*LTALVSXKGKGYKGVTSRWHTKKLPRKTH--KGLRKVACIG-AWHPSRV 509
L + L ++ L KGKG++GV RW R +H K R+ G P R
Sbjct: 94 LDVRVLESVRYLDVCALSKGKGFQGVVKRWGFSG-GRSSHGSKFHREAGSTGQCTSPGRT 152
Query: 508 SFTVARAGQKGYHHRTEMNKKIYRI--GQGIHKKDGKVIKNNASTEY 374
V G+ G T N +I RI G G+ G V N +T +
Sbjct: 153 FKNVKMPGRMGAERVTVQNLRIERIDVGLGVVMVRGAVPGRNKATVF 199
>UniRef50_Q2BFU2 Cluster: RTX toxins and related Ca2+-binding
protein; n=2; Bacillus sp. NRRL B-14911|Rep: RTX toxins
and related Ca2+-binding protein - Bacillus sp. NRRL
B-14911
Length = 1415
Score = 34.7 bits (76), Expect = 2.8
Identities = 19/45 (42%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = -2
Query: 409 GKVIKNNASTEYD-LSEKSITPMGGFPHYGEVNNDFVMXQGLLHG 278
G VI+ N D LS K++T MG EV NDF M ++HG
Sbjct: 299 GAVIEGNVKVSGDFLSLKNLTIMGDLEIAKEVENDFYMEDAIVHG 343
>UniRef50_P09001 Cluster: Mitochondrial 39S ribosomal protein L3;
n=31; Deuterostomia|Rep: Mitochondrial 39S ribosomal
protein L3 - Homo sapiens (Human)
Length = 348
Score = 34.3 bits (75), Expect = 3.6
Identities = 23/66 (34%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
Frame = -2
Query: 622 GKGYKGVTSRWHTKKLPRKTH---KGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMN 452
GKG++GV RW K P TH K R+ + RV G+ G +RTE
Sbjct: 212 GKGFQGVMKRWGFKGQP-ATHGQTKTHRRPGAVATGDIGRVWPGTKMPGKMGNIYRTEYG 270
Query: 451 KKIYRI 434
K++RI
Sbjct: 271 LKVWRI 276
>UniRef50_Q890N9 Cluster: 50S ribosomal protein L3; n=32;
Bacteria|Rep: 50S ribosomal protein L3 - Clostridium
tetani
Length = 209
Score = 34.3 bits (75), Expect = 3.6
Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Frame = -2
Query: 625 KGKGYKGVTSRWHTKKLPRK-THKGLRKVACIG-AWHPSRVSFTVARAGQKGYHHRTEMN 452
KGKGY+G+ RW+ + P K R V +G A +P+R AG G T +N
Sbjct: 115 KGKGYQGIIKRWNAHRGPMSHGSKFHRAVGSMGAASYPARTFKNKRMAGHMGNVKSTVLN 174
Query: 451 KKIYR 437
++ +
Sbjct: 175 LEVVK 179
>UniRef50_Q8I4X9 Cluster: Putative uncharacterized protein; n=1;
Plasmodium falciparum 3D7|Rep: Putative uncharacterized
protein - Plasmodium falciparum (isolate 3D7)
Length = 1482
Score = 33.5 bits (73), Expect = 6.4
Identities = 19/67 (28%), Positives = 35/67 (52%)
Frame = +2
Query: 293 LXHHKVVVYFTIMGETSHRCNGFLRQIILSRCIVFNNFAILFVDSLSNTIDFLVHFSTVM 472
L H ++ YF + +SH +II + +++NNFA +F+ L D V+F+ +
Sbjct: 463 LFFHSLIQYFVYLNNSSHILINHKDKIIFIKHLLYNNFAQMFLKYL---CDNYVYFTPIN 519
Query: 473 ITFLTST 493
I + S+
Sbjct: 520 ILSIYSS 526
>UniRef50_P49404 Cluster: Putative mitochondrial 39S ribosomal
protein L3; n=2; Caenorhabditis|Rep: Putative
mitochondrial 39S ribosomal protein L3 - Caenorhabditis
elegans
Length = 403
Score = 33.1 bits (72), Expect = 8.4
Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Frame = -2
Query: 616 GYKGVTSRWHTKKLP-RKTHKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIY 440
G++G RW + P R+T K R++ +G+ +R+ G GY RT +I
Sbjct: 234 GFQGGMHRWGMRGQPTRRTTKSHRRIGSVGSVGDARIWPGKRMPGHMGYEWRTVSGLEIV 293
Query: 439 RI 434
RI
Sbjct: 294 RI 295
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 777,930,482
Number of Sequences: 1657284
Number of extensions: 15941806
Number of successful extensions: 38712
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 37416
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38668
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 69143070360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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