Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_T7_B02
(803 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein L3|Sch... 159 3e-40
SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3 |Schiz... 159 3e-40
SPBC685.09 |orc2|orp2|origin recognition complex subunit Orc2|Sc... 29 0.77
SPBC19F5.01c |puc1|SPBP8B7.32c|cyclin Puc1|Schizosaccharomyces p... 28 1.4
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 27 2.4
SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr... 27 4.1
SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces pombe... 26 7.2
SPAC22F8.07c |rtf1||replication termination factor Rtf1|Schizosa... 25 9.5
>SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein
L3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 388
Score = 159 bits (387), Expect = 3e-40
Identities = 83/167 (49%), Positives = 106/167 (63%), Gaps = 1/167 (0%)
Frame = -2
Query: 775 AXKXAHIMESNLXGYHRGQS-EMSQRTFWRNLSLSILCLPKMK*LTALVSXKGKGYKGVT 599
A K AH+ME + G E ++ F + + + + + + + +GKG +G T
Sbjct: 172 AQKKAHLMEIQVNGGSVADKVEWAREHFEKTVDIKST-FEQNEMIDVIGVTRGKGNEGTT 230
Query: 598 SRWHTKKLPRKTHKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIH 419
+RW TK+LPRKTH+GLRKVACIGAWHP+ V +TVARAG GY HRT++N KIYRIG G
Sbjct: 231 ARWGTKRLPRKTHRGLRKVACIGAWHPANVQWTVARAGNAGYMHRTQLNSKIYRIGAG-- 288
Query: 418 KKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMXQGLLHG 278
D K NAST++D +EK ITPMGGF YG V NDFVM G G
Sbjct: 289 -DDAK----NASTDFDATEKRITPMGGFVRYGVVENDFVMLNGATPG 330
Score = 91.9 bits (218), Expect = 1e-19
Identities = 41/61 (67%), Positives = 49/61 (80%)
Frame = -3
Query: 291 GCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKK 112
G GP KR++TLRKSL HT R ALE ++LK+IDT+SKFGHGRFQTPA+ F+GTLKK
Sbjct: 326 GATPGPVKRVLTLRKSLLTHTSRKALEPVSLKWIDTASKFGHGRFQTPAEAKQFLGTLKK 385
Query: 111 D 109
D
Sbjct: 386 D 386
>SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 388
Score = 159 bits (387), Expect = 3e-40
Identities = 83/167 (49%), Positives = 106/167 (63%), Gaps = 1/167 (0%)
Frame = -2
Query: 775 AXKXAHIMESNLXGYHRGQS-EMSQRTFWRNLSLSILCLPKMK*LTALVSXKGKGYKGVT 599
A K AH+ME + G E ++ F + + + + + + + +GKG +G T
Sbjct: 172 AQKKAHLMEIQVNGGSVADKVEWAREHFEKTVDIKST-FEQNEMIDVIGVTRGKGNEGTT 230
Query: 598 SRWHTKKLPRKTHKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIH 419
+RW TK+LPRKTH+GLRKVACIGAWHP+ V +TVARAG GY HRT++N KIYRIG G
Sbjct: 231 ARWGTKRLPRKTHRGLRKVACIGAWHPANVQWTVARAGNAGYMHRTQLNSKIYRIGAG-- 288
Query: 418 KKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMXQGLLHG 278
D K NAST++D +EK ITPMGGF YG V NDFVM G G
Sbjct: 289 -DDAK----NASTDFDATEKRITPMGGFVRYGVVENDFVMLNGATPG 330
Score = 91.9 bits (218), Expect = 1e-19
Identities = 41/61 (67%), Positives = 49/61 (80%)
Frame = -3
Query: 291 GCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKK 112
G GP KR++TLRKSL HT R ALE ++LK+IDT+SKFGHGRFQTPA+ F+GTLKK
Sbjct: 326 GATPGPVKRVLTLRKSLLTHTSRKALEPVSLKWIDTASKFGHGRFQTPAEAKQFLGTLKK 385
Query: 111 D 109
D
Sbjct: 386 D 386
>SPBC685.09 |orc2|orp2|origin recognition complex subunit
Orc2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 29.1 bits (62), Expect = 0.77
Identities = 11/33 (33%), Positives = 21/33 (63%)
Frame = +2
Query: 401 NFAILFVDSLSNTIDFLVHFSTVMITFLTSTSY 499
NFA+L+ SL ++ +F++H +T + T+Y
Sbjct: 377 NFALLWDTSLESSFNFVMHDATTFARYYNETTY 409
>SPBC19F5.01c |puc1|SPBP8B7.32c|cyclin Puc1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 359
Score = 28.3 bits (60), Expect = 1.4
Identities = 14/43 (32%), Positives = 20/43 (46%)
Frame = -3
Query: 783 VKQRQKXLTLWNPTXRGTIEXKVK*AREHSGETYPCRFCVCPR 655
V ++ LT PT +IE K+ A +S PC V P+
Sbjct: 3 VSSNEEQLTAHTPTSSSSIEPKILAACSYSLSVGPCSLAVSPK 45
>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 230
Score = 27.5 bits (58), Expect = 2.4
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = +2
Query: 368 QIILSRCIVFNNFAILFVDSLSNTIDFLVHFSTVMITFLTS 490
++ L RC++ F +LF S S + FL S + I + +S
Sbjct: 109 ELSLFRCLLLFFFFLLFFLSFSFSFSFLFFLSQIFIVYFSS 149
>SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 511
Score = 26.6 bits (56), Expect = 4.1
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -2
Query: 130 HGYTQEGSYSRRSCGYHNPS 71
HGY+ + R+ C YHNPS
Sbjct: 307 HGYSMY-ALERKMCNYHNPS 325
>SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 830
Score = 25.8 bits (54), Expect = 7.2
Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = +2
Query: 353 NGFLRQIILSRCIVFNNFAI-LFVDSLSNTIDFLVHFSTVMITF 481
N FL + SRC V N+ I + V S ++F++ M+ +
Sbjct: 366 NSFLHNMGYSRCYVDENYHITIHVSSYERRVEFMLAVCEAMMLY 409
>SPAC22F8.07c |rtf1||replication termination factor
Rtf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 466
Score = 25.4 bits (53), Expect = 9.5
Identities = 14/42 (33%), Positives = 19/42 (45%)
Frame = +2
Query: 413 LFVDSLSNTIDFLVHFSTVMITFLTSTSYSERHPRRMPSSNA 538
LF+D LS D L+H ++ + T S H SNA
Sbjct: 421 LFIDGLSTFSDTLIHLHKMLNSSPEETYISNLHDSYTAFSNA 462
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,241,261
Number of Sequences: 5004
Number of extensions: 67765
Number of successful extensions: 196
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 390427050
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -